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Report for CCDS49194.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49194.1 Public Mus musculus 12 Btbd6 23 108 98 CCDS HistoryNCBI Gene:399566Re-query CCDS DB by CCDS ID:49194.1Re-query CCDS DB by GeneID:399566See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49194.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165079.7 ENSMUSP00000127286.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165079.7Link to Ensembl Protein Viewer:ENSMUSP00000127286.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165079Re-query CCDS DB by Protein ID:ENSMUSP00000127286
Original member Current member EBI ENSMUST00000221104.1 ENSMUSP00000152889.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000221104.1Link to Ensembl Protein Viewer:ENSMUSP00000152889.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000221104Re-query CCDS DB by Protein ID:ENSMUSP00000152889
Original member Current member NCBI NM_001145900.1 NP_001139372.1 Accepted alive Link to Nucleotide Sequence:NM_001145900.1Link to Protein Sequence:NP_001139372.1Re-query CCDS DB by Nucleotide ID:NM_001145900Re-query CCDS DB by Protein ID:NP_001139372Link to BLAST:NP_001139372.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139372.1 488 Q8K2J9-1 488 100% 0 0

Chromosomal Locations for CCDS 49194.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 112976759 112976982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112977059 112977149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112977253 112977371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112977504 112978536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGGCCGCGGAACTGTACCCGCCCGCCAGTCCCTCTGCAGCTACTGCCACCGACATCGCCAACAGCAACG
CGGCAGGCGCAGCCGAGAGCACGAAGGTCGGGCTTTGCTGCCCGCCCTGCCTGGCACCCGCCCCGCTGCC
GCCCTTGCCCGCGCCGCCCTTGCCAGACAACAACAATCCCGAGAGCCCCAACTGGCAGTCCTTCCATCCT
ACGCTGCGCGAGAGGAATGCGCTCATGTTCAACAACGAGCTGATGGCTGACGTCCACTTCATCGTGGGGG
CTCTGGGGGCTGCCAGGCGTGTGCCCGCCCACAAGTATGTCTTGGCTGTCGGCAGCTCCGTCTTCTATGC
CATGTTCTACGGGGATCTTGCGGAAGTGAAGTCAGAAATCCACATTCCCGATGTGGAGCCTGCTGCCTTC
TTGGTCTTGCTAAAGTACATGTACAGCGATGAGATCGACCTGGAGGCGGACACAGTGCTTGCCACTCTGT
ATGCTGCTAAGAAGTACATCGTGCCTGCCCTGGCCAAGGCCTGCGTCAACTTTCTGGAAACAAGTCTGGA
AGCCAAAAATGCTTGTGTCCTGCTGTCCCAGAGCCGACTGTTTGAGGAGCCTGAACTGACCCAGAGATGC
TGGGAAGTCATTGATGCACAAGCTGAAATGGCCCTGAGGTCTGAAGGCTTCTGTGAAATTGACCGGCAGA
CACTGGAGATCATTGTGACCAGGGAGGCCCTCAATACCAAGGAGGCTGTGGTCTTCGAGGCCGTCCTGAA
CTGGGCTGAGGCAGAATGTAAGAGACAGGGCCTCCCAGTCACTCCTCACAACAAGAGGCATGTTTTGGGA
AGAGCCCTCTACCTGGTCCGAATTCCAACTATGACCTTAGAGGAGTTTGCCAATGGTGCCGCCCAGTCAG
ACATCCTGACCTTAGAAGAGACCCACAACATCTTCCTTTGGTACACTGCTGCCAAAAAGCCCCTCCTTGA
CTTCCCCCTGACCAAGAGGAAGGGCCTTGCTCCACAAAGGTGCCACCGCTTCCAGTCTTCTGCCTACCGA
AGTAACCAGTGGAGGTACCGTGGACGCTGTGACAGCATCCAGTTTGCAGTGGACAGAAGGGTGTTCATTG
CTGGGCTGGGCTTGTATGGGTCCAGCTCTGGGAAGGCTGAGTACAGCGTCAAGATTGAACTCAAGCGGCT
AGGGATGGTCCTGGCTCAGAACCTCACCAAGTTTGTTTCAGACGGATCCAGCAACACTTTCCCAGTCTGG
TTTGAGCACCCGGTCCAGGTGGAGCAGGACACCTTCTACACTGCCAGTGCTGTCCTGGACGGCAGTGAGC
TCAGCTACTTTGGGCAAGAAGGAATGACAGAGGTGCAGTGTGGGAAGGTAGCCTTCCAGTTCCAGTGCTC
CTCAGACAGTACCAATGGGACTGGAGTTCAGGGTGGACAGATTCCAGAGCTCATCTTCTATGCCTGA

Translation (488 aa):
MAAELYPPASPSAATATDIANSNAAGAAESTKVGLCCPPCLAPAPLPPLPAPPLPDNNNPESPNWQSFHP
TLRERNALMFNNELMADVHFIVGALGAARRVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAF
LVLLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSLEAKNACVLLSQSRLFEEPELTQRC
WEVIDAQAEMALRSEGFCEIDRQTLEIIVTREALNTKEAVVFEAVLNWAEAECKRQGLPVTPHNKRHVLG
RALYLVRIPTMTLEEFANGAAQSDILTLEETHNIFLWYTAAKKPLLDFPLTKRKGLAPQRCHRFQSSAYR
SNQWRYRGRCDSIQFAVDRRVFIAGLGLYGSSSGKAEYSVKIELKRLGMVLAQNLTKFVSDGSSNTFPVW
FEHPVQVEQDTFYTASAVLDGSELSYFGQEGMTEVQCGKVAFQFQCSSDSTNGTGVQGGQIPELIFYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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