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Report for CCDS49117.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49117.1 Public Mus musculus 12 Esrrb 23 108 98 CCDS HistoryNCBI Gene:26380Re-query CCDS DB by CCDS ID:49117.1Re-query CCDS DB by GeneID:26380See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49117.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116402.9 ENSMUSP00000112103.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116402.9Link to Ensembl Protein Viewer:ENSMUSP00000112103.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000116402Re-query CCDS DB by Protein ID:ENSMUSP00000112103
Original member Current member NCBI NM_001159500.1 NP_001152972.1 Accepted alive Link to Nucleotide Sequence:NM_001159500.1Link to Protein Sequence:NP_001152972.1Re-query CCDS DB by Nucleotide ID:NM_001159500Re-query CCDS DB by Protein ID:NP_001152972Link to BLAST:NP_001152972.1

Chromosomal Locations for CCDS 49117.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 86361537 86361538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86470146 86470555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86488547 86488663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86505815 86505925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86506349 86506510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86514281 86514550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 86518821 86519065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGCTGCTGAACCGAATGTCGTCCGAAGACAGGCACCTGGGCTCTAGTTGCGGCTCCTTCATCAAGACGG
AGCCATCCAGCCCGTCCTCGGGCATTGATGCCCTCAGCCACCACAGCCCCAGCGGCTCGTCGGACGCCAG
TGGTGGCTTTGGCATTGCCCTGAGCACCCACGCCAACGGTCTGGACTCGCCGCCTATGTTCGCAGGTGCG
GGGCTGGGAGGCAACCCGTGCCGCAAGAGCTACGAGGACTGTACTAGTGGTATCATGGAGGACTCCGCCA
TCAAATGCGAGTACATGCTTAACGCCATCCCCAAGCGCCTGTGCCTCGTGTGCGGGGACATTGCCTCTGG
CTACCACTACGGAGTGGCCTCCTGCGAGGCTTGCAAGGCGTTCTTCAAGAGAACCATTCAAGGCAACATC
GAGTACAACTGCCCGGCCACCAATGAATGTGAGATCACCAAACGGAGGCGCAAGTCCTGTCAGGCCTGCC
GATTCATGAAATGCCTCAAAGTGGGGATGCTGAAGGAAGGTGTGCGCCTTGACCGAGTTCGAGGAGGCCG
CCAGAAGTACAAGCGACGGCTGGATTCGGAGAACAGCCCCTACCTGAACCTGCCGATTTCCCCACCTGCT
AAAAAGCCATTGACTAAGATCGTCTCGAATCTACTAGGGGTTGAGCAGGACAAGCTGTATGCTATGCCTC
CCAACGATATCCCCGAGGGAGATATCAAGGCCCTGACCACTCTCTGTGAATTGGCAGATCGGGAGCTTGT
GTTCCTCATCAACTGGGCCAAGCACATCCCAGGCTTCCCCAGTCTGACACTTGGGGACCAGATGAGCCTG
CTGCAGAGTGCCTGGATGGAGATTCTCATCTTGGGCATCGTGTACCGCTCGCTCCCATACGATGACAAGC
TGGCATACGCCGAGGACTATATCATGGATGAGGAACACTCTCGCCTGGTAGGGCTGCTGGACCTTTACCG
AGCCATCCTGCAGCTGGTGCGCAGGTACAAGAAACTCAAGGTAGAGAAGGAAGAGTTTATGATCCTCAAG
GCCCTGGCCCTCGCCAACTCAGATTCGATGTACATTGAGAACCTGGAGGCGGTGCAGAAGCTCCAGGACC
TGCTGCACGAGGCGCTGCAGGACTATGAGCTGAGTCAGCGCCACGAGGAGCCGCGGAGGGCCGGCAAGCT
GCTGCTGACGCTGCCCCTGCTGAGGCAGACAGCCGCCAAAGCCGTGCAACACTTCTACAGTGTGAAACTG
CAGGGCAAGGTGCCCATGCACAAACTCTTCCTGGAGATGCTGGAGGCCAAGGTGTGA

Translation (438 aa):
MLLNRMSSEDRHLGSSCGSFIKTEPSSPSSGIDALSHHSPSGSSDASGGFGIALSTHANGLDSPPMFAGA
GLGGNPCRKSYEDCTSGIMEDSAIKCEYMLNAIPKRLCLVCGDIASGYHYGVASCEACKAFFKRTIQGNI
EYNCPATNECEITKRRRKSCQACRFMKCLKVGMLKEGVRLDRVRGGRQKYKRRLDSENSPYLNLPISPPA
KKPLTKIVSNLLGVEQDKLYAMPPNDIPEGDIKALTTLCELADRELVFLINWAKHIPGFPSLTLGDQMSL
LQSAWMEILILGIVYRSLPYDDKLAYAEDYIMDEEHSRLVGLLDLYRAILQLVRRYKKLKVEKEEFMILK
ALALANSDSMYIENLEAVQKLQDLLHEALQDYELSQRHEEPRRAGKLLLTLPLLRQTAAKAVQHFYSVKL
QGKVPMHKLFLEMLEAKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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