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Report for CCDS49100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49100.1 Public Mus musculus 12 Plekhd1 23 108 98 CCDS HistoryNCBI Gene:217682Re-query CCDS DB by CCDS ID:49100.1Re-query CCDS DB by GeneID:217682See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49100.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000140770.1 ENSMUSP00000119711.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000140770.1Link to Ensembl Protein Viewer:ENSMUSP00000119711.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000140770Re-query CCDS DB by Protein ID:ENSMUSP00000119711
Original member Current member NCBI NM_001177503.1 NP_001170974.1 Accepted alive Link to Nucleotide Sequence:NM_001177503.1Link to Protein Sequence:NP_001170974.1Re-query CCDS DB by Nucleotide ID:NM_001177503Re-query CCDS DB by Protein ID:NP_001170974Link to BLAST:NP_001170974.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001170974.1 505 B2RPU2 505 100% 0 0

Chromosomal Locations for CCDS 49100.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 80692879 80693027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80705544 80705637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80706005 80706094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80706353 80706429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80707172 80707263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80708182 80708234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80717221 80717315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80718913 80719006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80720584 80720762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80721213 80721345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80721449 80721593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80721946 80722095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80722319 80722485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGTTCACATCCAAGTCCAACTCCGTGTCGCCATCGCCGTCCCTGGAGCAGGCGGACGCGGACGCGCTGG
ACATCAGCACCAAAGTGCAGCTCTACGGGGTTCTGTGGAAACGGCCGTTCGGGAGATCCTCGGCCAAGTG
GTCCCGGCGGTTTTTCATCATCAAAGAAAGCTTTCTGCTTTACTACTCTGAGAGTGAGAGAAAGAGCTTT
GAAACCAATAAGTACTTCAATATTCATCCTAAGGGTGTCATTCCACTGGGTGGCTGCCTGGTGGAGGCCA
GAGAAGAGCCCAGTATGCCCTATGCCATGAAGATCTCACACCAGGACTTCCATGGGAATGTCTTGTTGGC
TGCGGAGTCTGAGTTTGAGCAGACACAATGGCTGGAGATGTTGCAGGAGTCTGGGAAGGTGACCTGGAAA
AATGCCCAGCTAGGGGAAGCTATGATCAAAAGCCTGGAGGCACAGGGGCTACAGCTGGCTAAGGAAAAGC
AGGAATATTTAGACAAGCTGATGGAGGAGACAGAAGAACTGTGCCTTCAGAGGGAACAGAGAGAGGAGCT
TGAGCGCCTGAACCAAGTGCTGGAGGCCGAGAAACAGCAGTTTGAGGAGGTGGTGCAAGAGCTGAGAGTG
GAGCAGGAGCAGATCAAAAGGGAGCTAGAACTCACTGCAAGATGCCTCAAGGGCGTGGAACAAGAGAAGA
AGGAGCTGAGACACCTCACAGAGTCCTTACAGCATACGCTGGAGGAACTCTCCATAGAGAAGAAGAAAAC
CCTAGAGATGCTGGAGGAAGATAAGAACCAGCCACAGCCCTTGACCAACCAGAGTGAGCAGCCACCGGCC
AGTGATGGTCTCCATAGCAACCTCAGGCAGATCGAAGAGCGGATGCAGGAGCTATTGGCGGAGAAGCTTC
TGGCTGAGAAGCGGATGAAGGAGAATGAGGAACGCTCTCGGGCTCTGGAGGAGGAACGGGAATTCTACTC
AAGCCAGTCCCAAGCCCTGCAGAACTCGCTGCAGGAGCTCACTGCAGAGAAGCAGCAGGCGGAGCGGGAA
CTCAAGGCTGAAGTGAAAGTACGCATGGACCTTGAGAGGCGGCTTCGGGAGGCAGAGGCGGCCTTGCGGA
GCCTGGAACAAGGCCTCAATTCCAAGGTTCGGAACAAGGAGAAGGAAGAACGGATGCGGGCGGACGTGAG
CCACCTGAAAAGGTTCTTCGAGGAGTGCATCCGGAATGCAGAGCTGGAGGCCAAGATGCCGGTCATCATG
AAGAACTCCGTGTACATCCATAAGGCAGCCACTCGCCGCATCAAAAGCTGCCGATTCCACCGCCGCCGGT
CCAGTACTTCCTGGAATGACATGAAGCCATCCCAGTCCTTCATGACCTCCCAGCTAGAAGCCAACAACAT
AGAGGAGCTGAAGGAGGTAGCCAAGCGGCTAAGCAGAGACCAGCGCTTCCGGGAATCCATCTATCACATC
ATGGCTACCCAGCCTGGGGCCTCTGCACTTCCCCGGGGAGGAAAGTAA

Translation (505 aa):
MFTSKSNSVSPSPSLEQADADALDISTKVQLYGVLWKRPFGRSSAKWSRRFFIIKESFLLYYSESERKSF
ETNKYFNIHPKGVIPLGGCLVEAREEPSMPYAMKISHQDFHGNVLLAAESEFEQTQWLEMLQESGKVTWK
NAQLGEAMIKSLEAQGLQLAKEKQEYLDKLMEETEELCLQREQREELERLNQVLEAEKQQFEEVVQELRV
EQEQIKRELELTARCLKGVEQEKKELRHLTESLQHTLEELSIEKKKTLEMLEEDKNQPQPLTNQSEQPPA
SDGLHSNLRQIEERMQELLAEKLLAEKRMKENEERSRALEEEREFYSSQSQALQNSLQELTAEKQQAERE
LKAEVKVRMDLERRLREAEAALRSLEQGLNSKVRNKEKEERMRADVSHLKRFFEECIRNAELEAKMPVIM
KNSVYIHKAATRRIKSCRFHRRRSSTSWNDMKPSQSFMTSQLEANNIEELKEVAKRLSRDQRFRESIYHI
MATQPGASALPRGGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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