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Report for CCDS49057.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49057.1 Public Mus musculus 12 Nrcam 23 108 98 CCDS HistoryNCBI Gene:319504Re-query CCDS DB by CCDS ID:49057.1Re-query CCDS DB by GeneID:319504See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49057.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110748.3 ENSMUSP00000106376.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110748.3Link to Ensembl Protein Viewer:ENSMUSP00000106376.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110748Re-query CCDS DB by Protein ID:ENSMUSP00000106376
Original member Current member NCBI NM_001146031.1 NP_001139503.1 Accepted alive Link to Nucleotide Sequence:NM_001146031.1Link to Protein Sequence:NP_001139503.1Re-query CCDS DB by Nucleotide ID:NM_001146031Re-query CCDS DB by Protein ID:NP_001139503Link to BLAST:NP_001139503.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139503.1 1186 Q810U4-2 1186 100% 0 0

Chromosomal Locations for CCDS 49057.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 44532554 44532659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44537251 44537356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44539441 44539637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44540952 44541074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44544725 44544895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44545379 44545435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44547232 44547343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44549874 44550058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44551305 44551436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44559662 44559805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44562427 44562538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44563964 44564130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44564227 44564374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44566288 44566412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44568544 44568645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44570210 44570407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44570506 44570576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44571515 44571740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44572202 44572317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44573820 44574024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44575876 44575998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44576604 44576789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44590108 44590239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44590981 44591059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 44598350 44598587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3561 nt):
ATGCAGCTTAAAATAATGCCGAAGAAGAAGCACTTATCTGCAGGCGGAGTGCCCCTGATTCTCTTCCTGT
GCCAGATGATCAGCGCGCTGGATGTTCCTCTCGATCTGGTACAACCTCCAACCATCACTCAACAGTCACC
AAAAGACTACATCATTGACCCTCGGGAGAATATTGTAATCCAGTGTGAGGCCAAAGGGAAACCTCCCCCA
AGCTTTTCCTGGACTCGTAATGGAACTCACTTTGACATAGACAAGGACCCTCTGGTCACCATGAAGCCTG
GCTCAGGAACCCTTGTCATCAACATCATGAGTGAGGGGAAGGCAGAGACCTATGAAGGAGTCTACCAGTG
CACTGCAAGGAACGAGCGTGGAGCTGCCGTCTCCAATAACATTGTTGTCCGCCCATCTAGGTCACCCTTG
TGGACCAAGGAAAGACTTGAACCTATAGTACTCCAGAATGGGCAGTCATTAGTACTTCCATGTAGGCCTC
CGATTGGATTACCTCCGGCCATAATATTTTGGATGGATAATTCCTTTCAGAGACTTCCACAGAGTGAGCG
GGTTTCCCAAGGCCTAAATGGAGACCTTTACTTCTCCAATGTCCTCCCAGAGGACACCCGTGAGGACTAT
ATCTGCTATGCCAGATTTAATCACACTCAAACCATCCAGCAGAAGCAGCCTATTTCTTTGAAGGTGATTT
CAGTGGATGAATTGAATGACACTATAGCTGCTAATTTGAGTGACACTGAGTTTTATGGTGCTAAATCTAG
TAAAGAGAGGCCCCCAACGTTTCTAACTCCAGAGGGCAATGAAAGCCACAAAGAGGAATTAAGAGGAAAC
GTGCTTTCGCTGGAGTGCATTGCGGAAGGCCTACCTACTCCAATTATTTACTGGATCAAAGAAGACGGAA
TGCTTCCCGCCAACCGGACATTTTATCGGAACTTTAAGAAAACCCTGCAGATCACTCATGTTTCCGAAGC
CGACTCTGGAAATTATCAGTGCATAGCAAAAAACGCATTAGGAGCCGTCCATCACACCATTTCTGTCACT
GTTAAAGCGGCTCCCTACTGGATCGTGGCACCTCAAAACCTCGTGCTTTCCCCGGGAGAGAATGGGACCC
TCATCTGCAGAGCTAATGGCAACCCGAAACCCAGAATTAGCTGGTTAACAAATGGAGTCCCAATAGAAAT
TGCTCTCGATGACCCCAGCAGAAAAATAGATGGCGATACCATTATATTTTCAAATGTTCAAGAAAGCTCA
AGTGCGGTTTATCAGTGCAATGCCTCTAACAAATATGGATATTTACTAGCAAATGCATTTGTAAATGTTC
TCGCTGAACCACCTCGGATTCTCACATCAGCAAACACACTGTACCAGGTCATTGCAAACAGGCCTGCTTT
GCTAGATTGTGCCTTCTTTGGATCTCCTATGCCTACCATTGAGTGGTTTAAAGGCACTAAAGGAAGCGCT
CTTCATGAAGACATTTATGTTTTGCATGATAATGGAACATTAGAAATTCCCGTGGCCCAAAAGGATAGTA
CAGGGACGTATACTTGTGTCGCACGGAATAAACTAGGGATGGCAAAGAATGAAGTTCACTTGGAAATCAA
AGATCCAACCAGGATCATTAAACAACCTGAGTATGCAGTCGTCCAGAGGGGGAGCAAGGTGTCCTTTGAA
TGCAGAGTGAAACATGACCACACCTTAATCCCCACCATTATGTGGCTGAAGGACAATGGAGAGCTGCCCA
ATGATGAAAGGTTCTCCACTGACAAGGATCATCTGGTGGTATCTGATGTAAAGGATGACGATGGCGGAAC
CTACACGTGTACGGCCAACACAACGCTGGACAGTGCTTCGGCCAGCGCTGTGCTCAGGGTTGTCGATGTC
CCGAATCCTCCCTTTGATTTAGAATTGACCAATCAACTTGACAAAAGTGTTCAGCTGACATGGACCCCAG
GCGACGACAACAATAGCCCCATTACAAAATTCATCATTGAGTATGAAGATGCAATGCATGATGCAGGGCT
GTGGCGCCACCAGGCTGAAGTTTCTGGAACACAGACCACAGCCCAACTGAAGCTGTCTCCCTATGTGAAC
TACTCCTTCCGTGTCATGGCAGAGAACAGCATTGGGAGAAGTATGCCGAGCGAGGCATCCGAGCAGTATC
TTACAAAAGCCGCAGAACCAGATCAGAATCCCATGGCTGTGGAAGGACTAGGGACAGAGCCGGACAACTT
GGTGATTACATGGAAGCCCCTGAATGGTTTTCAATCGAATGGGCCTGGCCTCCAGTACAAAGTGAGCTGG
CGCCAGAAAGATGGTGACGATGAGTGGACGTCTGTGGTTGTGGCCAATGTATCCAAATACATTGTTTCTG
GCACACCAACCTTTGTCCCATACCTGATAAAAGTTCAAGCTCTGAATGATGTGGGGTTTGCACCAGAGCC
AGCTGCAGTCATGGGGCATTCTGGAGAAGACCTTCCAATGGTGGCTCCTGGAAATGTTCGCGTCAGCGTG
GTGAACAGTACGCTGGCAGAGGTGCACTGGGACCCAGTTCCTCCCAAGAGTGTCCGAGGACACTTACAAG
GCTACCGGATTTACTACTGGAAGACCCAGAGCTCCTCTAAAAGAAACAGGCGCCACATTGAGAAGAAGAT
CCTCACCTTCCAGGGCACCAAGACTCACGGCATGCTGCCAGGGCTGCAGCCATACAGTCACTATGCCCTC
AACGTCCGAGTGGTCAACGGGAAAGGGGAGGGCCCAGCCAGCACGGACAGAGGCTTCCATACACCGGAGG
GAGTCCCTAGTGCTCCCTCATCTTTGAAAATTGTTAATCCCACACTGGACTCCCTCACTTTGGAATGGGA
CCCCCCAAGCCACCCAAATGGCATCCTGACTGAGTACATCTTACAATATCAGCCAATTAACAGCACACAT
GAGCTAGGCCCTCTGGTAGATTTAAAAATTCCTGCCAACAAGACCCGCTGGACTTTGAAAAATTTAAATT
TCAGCACTCGGTACAAGTTCTATTTCTATGCACAGACATCAGTGGGGCCAGGCAGTCAGATCACAGAGGA
AGCGATAACGACTGTGGACGAAGGTAAGAAGGCAATGGCAAGCCGGCAAGTGGATATCGCGACCCAAGGC
TGGTTCATAGGTCTAATGTGCGCTGTTGCTCTCCTCATCTTAATTTTGCTGATTGTTTGCTTCATCAGAA
GAAACAAAGGTGGTAAATACCCAGTTAAAGAAAAGGAGGATGCTCATGCAGACCCTGAAATCCAGCCCAT
GAAGGAAGATGATGGGACGTTTGGAGAATACAGTGATGCAGAAGATCACAAGCCTTTGAAAAAAGGAAGT
CGAACACCTTCAGACAGGACTGTGAAAAAAGAAGATAGCGATGATAGTCTGGTTGACTATGGAGAGGGGG
TGAACGGCCAATTCAACGAGGATGGCTCCTTTATTGGCCAATACAGTGGTAAGAAAGAGAAAGAGCCAGC
AGAGGGAAATGAAAGCTCAGAGGCCCCTTCTCCTGTCAACGCAATGAACTCCTTTGTTTAA

Translation (1186 aa):
MQLKIMPKKKHLSAGGVPLILFLCQMISALDVPLDLVQPPTITQQSPKDYIIDPRENIVIQCEAKGKPPP
SFSWTRNGTHFDIDKDPLVTMKPGSGTLVINIMSEGKAETYEGVYQCTARNERGAAVSNNIVVRPSRSPL
WTKERLEPIVLQNGQSLVLPCRPPIGLPPAIIFWMDNSFQRLPQSERVSQGLNGDLYFSNVLPEDTREDY
ICYARFNHTQTIQQKQPISLKVISVDELNDTIAANLSDTEFYGAKSSKERPPTFLTPEGNESHKEELRGN
VLSLECIAEGLPTPIIYWIKEDGMLPANRTFYRNFKKTLQITHVSEADSGNYQCIAKNALGAVHHTISVT
VKAAPYWIVAPQNLVLSPGENGTLICRANGNPKPRISWLTNGVPIEIALDDPSRKIDGDTIIFSNVQESS
SAVYQCNASNKYGYLLANAFVNVLAEPPRILTSANTLYQVIANRPALLDCAFFGSPMPTIEWFKGTKGSA
LHEDIYVLHDNGTLEIPVAQKDSTGTYTCVARNKLGMAKNEVHLEIKDPTRIIKQPEYAVVQRGSKVSFE
CRVKHDHTLIPTIMWLKDNGELPNDERFSTDKDHLVVSDVKDDDGGTYTCTANTTLDSASASAVLRVVDV
PNPPFDLELTNQLDKSVQLTWTPGDDNNSPITKFIIEYEDAMHDAGLWRHQAEVSGTQTTAQLKLSPYVN
YSFRVMAENSIGRSMPSEASEQYLTKAAEPDQNPMAVEGLGTEPDNLVITWKPLNGFQSNGPGLQYKVSW
RQKDGDDEWTSVVVANVSKYIVSGTPTFVPYLIKVQALNDVGFAPEPAAVMGHSGEDLPMVAPGNVRVSV
VNSTLAEVHWDPVPPKSVRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGTKTHGMLPGLQPYSHYAL
NVRVVNGKGEGPASTDRGFHTPEGVPSAPSSLKIVNPTLDSLTLEWDPPSHPNGILTEYILQYQPINSTH
ELGPLVDLKIPANKTRWTLKNLNFSTRYKFYFYAQTSVGPGSQITEEAITTVDEGKKAMASRQVDIATQG
WFIGLMCAVALLILILLIVCFIRRNKGGKYPVKEKEDAHADPEIQPMKEDDGTFGEYSDAEDHKPLKKGS
RTPSDRTVKKEDSDDSLVDYGEGVNGQFNEDGSFIGQYSGKKEKEPAEGNESSEAPSPVNAMNSFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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