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Report for CCDS49055.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49055.1 Public Mus musculus 12 Scin 23 108 98 CCDS HistoryNCBI Gene:20259Re-query CCDS DB by CCDS ID:49055.1Re-query CCDS DB by GeneID:20259See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49055.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002640.5 ENSMUSP00000002640.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002640.5Link to Ensembl Protein Viewer:ENSMUSP00000002640.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000002640Re-query CCDS DB by Protein ID:ENSMUSP00000002640
Original member Current member NCBI NM_001146196.1 NP_001139668.1 Accepted alive Link to Nucleotide Sequence:NM_001146196.1Link to Protein Sequence:NP_001139668.1Re-query CCDS DB by Nucleotide ID:NM_001146196Re-query CCDS DB by Protein ID:NP_001139668Link to BLAST:NP_001139668.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139668.1 715 Q60604-1 715 100% 0 0

Chromosomal Locations for CCDS 49055.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 40060500 40060627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40061157 40061217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40063212 40063289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40068915 40069036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40069269 40069446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40073302 40073472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40076937 40077027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40077471 40077592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40079596 40079811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40080932 40081020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40081642 40081774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40084285 40084377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40104927 40105076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40124567 40124728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40127881 40128035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 40133910 40134108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2148 nt):
ATGGCGCAGGAGCTGCAGCACCCCGAGTTCGCGCGCGCAGGCCAGCAGGCTGGGCTGCAGGTGTGGAGGG
TCGAGAAGCTGGAACTGGTACCGGTGCCCCAGGGTGCCTATGGTGACTTTTACGTCGGAGACGCCTACCT
GGTGCTGCACACCACCAAGTCCAGCAGGGGCTTCTCCTACCGCCTGCATTTCTGGCTGGGAAAGGAGTGT
TCCCAGGATGAGAGCACAGCGGCTGCCATCTTTACGGTCCAGATGGACGACTATTTGGGTGGCAAGCCAG
TCCAGAGCAGAGAGCTTCAAGGCTATGAGTCGACTGATTTTGTGGGCTATTTCAAAGGCGGTCTGAAGTA
CAAGGCTGGAGGTGTGGCTTCTGGACTAAACCATGTCCTCACCAATGATCTGACTGCGAAAAGACTTCTG
CACGTGAAGGGTCGGAGAGTGGTCAGAGCCACTGAAGTTCCCCTCAGCTGGGAGAGCTTCAACAAGGGCG
ACTGCTTCATCATTGACCTTGGCACCGAAATTTACCAGTGGTGTGGTTCCTCCTGCAACAAATATGAGCG
TCTGAAAGCAAGCCAGGTGGCCATTGGCATCCGGGACAATGAGAGGAAAGGAAGATCTCAACTCATTGTG
GTGGAAGAAGGAAGTGAACCATCAGAGCTCATGAAGGTTTTAGGGAGAAAGCCTGAGCTTCCAGATGGGG
ACAATGATGACGATGTCGTAGCAGACATAAGTAACAGGAAGATGGCGAAGCTCTACATGGTTTCAGATGC
AAGTGGGTCCATGAAAGTAACACTGGTGGCTGAAGAAAACCCGTTCTCCATGGGAATGTTGCTTTCTGAA
GAATGCTTCATTTTGGACCATGGTGCTGCAAAACAAATTTTTGTATGGAAAGGTAAAAATGCTAACCCAC
AGGAGAGGAAGACTGCCATGAAGACAGCTGAGGAGTTTTTACAGAAAATGAAGTATTCTACTAATACTCA
AATTCAGGTTCTTCCGGAAGGCGGTGAAACACCAATTTTCAAACAGTTCTTTAAGGACTGGAAGGATAAA
GACCAGAGTGATGGCTTTGGGAAGGTGTACATCACGGAGAAAGTGGCTCAGATAAAGCAGATTCCGTTTG
ATGCCTCAAAACTGCACAGTTCTCCGCAGATGGCAGCCCAGCACAACATGGTGGACGATGGCTCTGGCGG
GGTGGAGATCTGGCGTGTAGAGAACAGTGGTAGAGTCCAGATTGACCCAAGCTCCTATGGCGAGTTCTAT
GGCGGTGACTGCTACATTATCCTCTACACTTATCCCAGAGGACAGATCATCTACACATGGCAAGGAGCAA
ATGCTACCAGAGATGAACTGACCATGTCCGCGTTTCTGACTGTCCAGTTGGACCGGTCCCTTGGAGGGCA
GGCTGTGCAGGTCCGTGTCTCTCAAGGCAAAGAGCCTGCTCACCTGCTGAGTTTGTTCAAAGACAAACCA
CTCATTATTTATAAGAATGGGACATCCAAGAAAGAAGGGCAGGCACCGGCTCCCCCTACACGCCTTTTTC
AAGTCCGGAGGAACCTGGCATCTATCACCAGAATTGTGGAGGTTGACGTTGATGCAAATTCATTAAATTC
TAATGACACTTTTGTCCTAAAACTGCCACGAAACAATGGCTTCATCTGGATAGGAAAAGGTGCTAGCCAG
GAGGAGGAGAAAGGAGCAGAGTATGTGGCTGATGTCCTCAAGTGCAAAGCTTCAAGAATTCAAGAAGGCA
AGGAACCAGAGGAATTCTGGAACTCTCTTGGAGGGAGGGGAGACTACCAGACTTCACCATTGCTAGAAAC
TCGGGCTGAAGACCATCCACCTCGGCTTTATGGTTGCTCCAACAAAACTGGAAGATTCATTATTGAAGAA
GTTCCGGGAGAGTTCACCCAGGATGACCTGGCAGAAGATGATGTCATGCTACTTGATGCGTGGGAACAGA
TCTTTATTTGGATTGGCAAAGATGCCAATGAAGTTGAGAAAAAGGAATCAGTGAAGTCTGCCAAAATGTA
CCTGGAGACAGACCCTTCTGGAAGAGACAAGAGGACACCGATTGTCATCATCAAGCAAGGGCACGAGCCC
CCCACATTCACAGGCTGGTTTCTGGGCTGGGACTCCAGCAGGTGGTAA

Translation (715 aa):
MAQELQHPEFARAGQQAGLQVWRVEKLELVPVPQGAYGDFYVGDAYLVLHTTKSSRGFSYRLHFWLGKEC
SQDESTAAAIFTVQMDDYLGGKPVQSRELQGYESTDFVGYFKGGLKYKAGGVASGLNHVLTNDLTAKRLL
HVKGRRVVRATEVPLSWESFNKGDCFIIDLGTEIYQWCGSSCNKYERLKASQVAIGIRDNERKGRSQLIV
VEEGSEPSELMKVLGRKPELPDGDNDDDVVADISNRKMAKLYMVSDASGSMKVTLVAEENPFSMGMLLSE
ECFILDHGAAKQIFVWKGKNANPQERKTAMKTAEEFLQKMKYSTNTQIQVLPEGGETPIFKQFFKDWKDK
DQSDGFGKVYITEKVAQIKQIPFDASKLHSSPQMAAQHNMVDDGSGGVEIWRVENSGRVQIDPSSYGEFY
GGDCYIILYTYPRGQIIYTWQGANATRDELTMSAFLTVQLDRSLGGQAVQVRVSQGKEPAHLLSLFKDKP
LIIYKNGTSKKEGQAPAPPTRLFQVRRNLASITRIVEVDVDANSLNSNDTFVLKLPRNNGFIWIGKGASQ
EEEKGAEYVADVLKCKASRIQEGKEPEEFWNSLGGRGDYQTSPLLETRAEDHPPRLYGCSNKTGRFIIEE
VPGEFTQDDLAEDDVMLLDAWEQIFIWIGKDANEVEKKESVKSAKMYLETDPSGRDKRTPIVIIKQGHEP
PTFTGWFLGWDSSRW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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