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Report for CCDS49015.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49015.1 Public Mus musculus 12 Dtnb 23 108 98 CCDS HistoryNCBI Gene:13528Re-query CCDS DB by CCDS ID:49015.1Re-query CCDS DB by GeneID:13528See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49015.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164578.8 ENSMUSP00000126194.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164578.8Link to Ensembl Protein Viewer:ENSMUSP00000126194.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000164578Re-query CCDS DB by Protein ID:ENSMUSP00000126194
Original member NCBI NM_001162465.2 NP_001155937.1 Updated not alive Link to Nucleotide Sequence:NM_001162465.2Link to Protein Sequence:NP_001155937.1Re-query CCDS DB by Nucleotide ID:NM_001162465Re-query CCDS DB by Protein ID:NP_001155937
Current member NCBI NM_001162465.3 NP_001155937.1 Accepted alive Link to Nucleotide Sequence:NM_001162465.3Link to Protein Sequence:NP_001155937.1Re-query CCDS DB by Nucleotide ID:NM_001162465Re-query CCDS DB by Protein ID:NP_001155937Link to BLAST:NP_001155937.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155937.1 659 O70585-1 659 100% 0 0

Chromosomal Locations for CCDS 49015.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 3589172 3589238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3591906 3591986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3596649 3596862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3617606 3617691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3632810 3632964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3643917 3644022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3648223 3648389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3686738 3686862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3718412 3718489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3732618 3732707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3734939 3735026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3748425 3748510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3749470 3749583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3751811 3751907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3772587 3772746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3773551 3773640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 3781106 3781281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1980 nt):
ATGATTGAGGAAGGCGGGAACAAGCGGAAGACCATGGCGGAGAAGAGGCAGCTCTTCATAGAAATGCGTG
CTCAGAATTTTGATGTCATACGACTATCAACGTACAGAACAGCTTGCAAGTTACGATTTGTACAGAAGCG
ATGCAACCTTCATCTTGTTGATATCTGGAATATGATCGAAGCTTTCCGAGACAATGGCCTTAACACGCTG
GACCACAGCACGGAGATCAGCGTGTCCCGCCTGGAGACCGTCATCTCGTCCATCTACTATCAGTTGAACA
AGCGCCTTCCTTCTACTCACCAGATCAGCGTGGAGCAGTCCATCAGTCTCCTACTCAATTTCATGGTCGC
CGCCTACGACAGTGAGGGCCGAGGCAAGTTGACCGTGTTTTCAGTTAAAGCTATGTTAGCAACCATGTGT
GGTGGAAAAATGCTGGACAAATTGAGATACATTTTCTCCCAGATGTCAGATTCCAATGGCTTAATGATGT
TTGGAAAGCTTGACCAGTTCCTGAAGGAAGCCCTGAAGCTCCCAACAGCTGTCTTTGAAGGGCCATCCTT
TGGTTACACAGAGCATGCAGTCCGTACCTGTTTTCCGCAGCAGAAGAAGATAATGCTGAATATGTTTTTA
GACACCATGATGGCTGATCCTCCTCCCCAGTGCCTTGTCTGGCTACCTCTCATGCACAGGCTTGCCCATG
TTGAGAATGTCTTCCATCCTGTGGAATGCTCCTACTGTCACTGCGAGAGCATGATGGGCTTCCGATACCG
ATGCCAGCAGTGCCACAACTACCAGCTCTGCCAGAACTGCTTTTGGCGTGGCCATGCCAGCGGCGCTCAC
AGCAACCAGCACCAGATGAAGGAGCATTCCTCTTGGAAATCCCCTGCAAAGAAGCTGAGCCATGCAATTA
GTAAATCTTTGGGATGTGTACCCTCCAGAGAACCCCCACATCCTGTTTTTCCTGAGCAACCAGAGAAACC
ACTTGACCTTGCACATCTAGTTCCTCCTCGCCCTCTGACCAATATGAATGACACCGTGGTTAGTCACATG
TCCTCTGGAGTGCCCACTCCCACCAAGAGGTTACAGTATAGCCAAGACATGCCCAATCTCTTGGCCGATG
AGCATGCGCTGATAGCCTCCTATGTGGCTCGTCTGCAACACTGCACACGTGTGCTGGACAGTCCTAGCCG
ACTGGATGAGGAACACCGGCTTATAGCCCGCTATGCTGCCCGGCTAGCTGCAGAGGCAGGAAACATGACT
CGTCCTCCCACTGATGCCAGCTTCAACTTTGATGCCAACAAACAACAGAGACAGCTCATTGCAGAGCTGG
AGAACAAGAACAGAGAGATCCTGCAGGAGATCCAGCGCCTGCGGCTGGAGCATGAACAGGCTTCCCAGCC
CACCCCTGAGAAGGCTCAGCAGAACCCCATGCTGCTAGCAGAGCTGCGCTTGCTGAGGCAAAGGAAAGAT
GAGCTGGAGCAAAGGATGTCAGCGCTGCAGGAGAGTAGGCGAGAGCTGATGGTGCAGCTGGAGGGGCTGA
TGAAGTTGCTAAAGGCTCAAGCCACAGGGTCACCACACACATCACCCACCCATGGAGGTGGCCGCCCTAT
GCCCATGCCTGTGCGTTCTACATCTGCTGGCTCCACCCCGACCCACGGCCCGCAGGACTCACTGAGTGGA
GTTGGGGGAGATGTCCAGGAGGCCTTTGCACAAGGTACGAGGAGAAACCTCCGCAATGACTTGCTGGTGG
CTGCTGACTCCATCACCAACACCATGTCCTCCCTGGTGAAGGAGCTCCATTCAGGCGCAGAGGCGGAGGA
GCAAGCTGGCACCGAGAAGACAAGGGAAGGTCTTCCCCCCAGAGGCACATTCCTGTCCGTCTTTCTGCTG
CACACCTGGACCAAGCTTGCAGGCTGCCAGACTCACTCAACCTCCAGAGAGAGGAGCCAAGCCTATGGGA
AGTGGGGAGGGACTGCCTGA

Translation (659 aa):
MIEEGGNKRKTMAEKRQLFIEMRAQNFDVIRLSTYRTACKLRFVQKRCNLHLVDIWNMIEAFRDNGLNTL
DHSTEISVSRLETVISSIYYQLNKRLPSTHQISVEQSISLLLNFMVAAYDSEGRGKLTVFSVKAMLATMC
GGKMLDKLRYIFSQMSDSNGLMMFGKLDQFLKEALKLPTAVFEGPSFGYTEHAVRTCFPQQKKIMLNMFL
DTMMADPPPQCLVWLPLMHRLAHVENVFHPVECSYCHCESMMGFRYRCQQCHNYQLCQNCFWRGHASGAH
SNQHQMKEHSSWKSPAKKLSHAISKSLGCVPSREPPHPVFPEQPEKPLDLAHLVPPRPLTNMNDTVVSHM
SSGVPTPTKRLQYSQDMPNLLADEHALIASYVARLQHCTRVLDSPSRLDEEHRLIARYAARLAAEAGNMT
RPPTDASFNFDANKQQRQLIAELENKNREILQEIQRLRLEHEQASQPTPEKAQQNPMLLAELRLLRQRKD
ELEQRMSALQESRRELMVQLEGLMKLLKAQATGSPHTSPTHGGGRPMPMPVRSTSAGSTPTHGPQDSLSG
VGGDVQEAFAQGTRRNLRNDLLVAADSITNTMSSLVKELHSGAEAEEQAGTEKTREGLPPRGTFLSVFLL
HTWTKLAGCQTHSTSRERSQAYGKWGGTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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