NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48979.1 Public Mus musculus 11 Rab37 23 108 98 CCDS HistoryNCBI Gene:58222Re-query CCDS DB by CCDS ID:48979.1Re-query CCDS DB by GeneID:58222See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48979.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067754.10 ENSMUSP00000065016.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067754.10Link to Ensembl Protein Viewer:ENSMUSP00000065016.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000067754Re-query CCDS DB by Protein ID:ENSMUSP00000065016
Original member Current member NCBI NM_001163753.1 NP_001157225.1 Accepted alive Link to Nucleotide Sequence:NM_001163753.1Link to Protein Sequence:NP_001157225.1Re-query CCDS DB by Nucleotide ID:NM_001163753Re-query CCDS DB by Protein ID:NP_001157225Link to BLAST:NP_001157225.1

Chromosomal Locations for CCDS 48979.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115091861 115091932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115146542 115146652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115157951 115157992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115158505 115158571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115158659 115158711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115159676 115159741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115160299 115160355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115160438 115160514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115160635 115160740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGGATCTGCAGAGACCGGACTCCTACCAGGGCGGAGCTGGCCCTCATTTCAGCGAGCATGTCCTACACA
AGACCATTCTGGTTGGTGACAGCGGCGTTGGGAAGACATCTCTACTGGTTCAGTTTGACCAGGGGAAGTT
CATCCCCGGCTCCTTCTCAGCCACCGTGGGTATCGGATTCACAAATAAAGTGGTGACAGTGGATGGTGCC
AGGGTGAAGCTTCAGATCTGGGACACTGCAGGACAGGAGCGCTTCCGCAGTGTGACCCATGCTTATTACC
GAGATGCTCAGGCTTTGCTCCTGTTGTATGACATCACCAACCAGTCCTCTTTTGACAACATCAGGGCCTG
GCTCACAGAGATTCATGAGTATGCCCAGAGAGACGTGGTGATTATGCTTCTAGGCAACAAGGCCGATGTA
AGCAGCGAAAGGGTGATCCGTTCTGAAGATGGAGAGACACTGGCCAGGGAATATGGTGTTCCTTTCATGG
AGACCAGTGCCAAGACTGGCATGAACGTGGAGTTGGCCTTTCTGGCAATTGCCAAGGAACTGAAATACCG
TGCAGGGAGGCAGCCTGATGAGCCCAGCTTCCAGATCCGAGACTATGTGGAGTCCCAGAAGAAGCGCTCC
AGCTGCTGCTCCTTTGTGTGA

Translation (216 aa):
MDLQRPDSYQGGAGPHFSEHVLHKTILVGDSGVGKTSLLVQFDQGKFIPGSFSATVGIGFTNKVVTVDGA
RVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADV
SSERVIRSEDGETLAREYGVPFMETSAKTGMNVELAFLAIAKELKYRAGRQPDEPSFQIRDYVESQKKRS
SCCSFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH