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Report for CCDS48953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48953.1 Public Mus musculus 11 Kansl1 23 108 98 CCDS HistoryNCBI Gene:76719Re-query CCDS DB by CCDS ID:48953.1Re-query CCDS DB by GeneID:76719See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48953.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018556.10 ENSMUSP00000018556.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018556.10Link to Ensembl Protein Viewer:ENSMUSP00000018556.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000018556Re-query CCDS DB by Protein ID:ENSMUSP00000018556
Original member Current member EBI ENSMUST00000106977.7 ENSMUSP00000102590.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106977.7Link to Ensembl Protein Viewer:ENSMUSP00000102590.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106977Re-query CCDS DB by Protein ID:ENSMUSP00000102590
Original member Current member NCBI NM_001081045.2 NP_001074514.1 Accepted alive Link to Nucleotide Sequence:NM_001081045.2Link to Protein Sequence:NP_001074514.1Re-query CCDS DB by Nucleotide ID:NM_001081045Re-query CCDS DB by Protein ID:NP_001074514Link to BLAST:NP_001074514.1
Original member Current member NCBI NM_001359634.1 NP_001346563.1 Accepted alive Link to Nucleotide Sequence:NM_001359634.1Link to Protein Sequence:NP_001346563.1Re-query CCDS DB by Nucleotide ID:NM_001359634Re-query CCDS DB by Protein ID:NP_001346563Link to BLAST:NP_001346563.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074514.1 1036 Q80TG1-1 1036 100% 0 0
NP_001346563.1 1036 Q80TG1-1 1036 100% 0 0

Chromosomal Locations for CCDS 48953.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 104334978 104335205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104335447 104335699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104336221 104336333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104336549 104336606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104338126 104338247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104342363 104342511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104343491 104343673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104350487 104350652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104356684 104356876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104357481 104357596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104368680 104368778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104378685 104378826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 104423922 104425210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3111 nt):
ATGGCTGCGATGGCGCCCGCTCTCACTGACGCAGCAGCTGAAGCACACCACATCCGGTTCAAACTGGCTC
CCCCATCCTCCACCTTGTCCCCTGGCAGTGCCGAAAATAACGGCAACGCCAATATTCTTATTTCTGCCAA
CGGAACCAAAAGAAAAGCCATTGCTGCGGAGGATCCCAGTCTAGACTTCCGCAATAATCCTACTAAGGAA
GACTTGGGAAAGCTGCAGCCATTGGTGGCATCTTATCTCTGCTCTGATGTAACATCTGTTCCCGCAAAAG
AGTCTTTGAAATTGCAAGGCGTTTTCAGCAAGCAGACAGTCCTTAAGTCTCATCCTCTTTTATCTCAGTC
CTATGAACTCCGAGCTGAGCTGCTGGGGAGGCAGCCAGTTTTGGAGTTTTCCTTAGAAAACCTTAGAACC
ATGAATACAAGTGGTCAGACAGCTCTGCCACAAGCGCCTGTAAATGGATTGGCTAAGAAATTGACTAAAA
GTTCAACACATTCGGATCATGACAATTCCAGTTCCCTCAATGGGGGAAAACGGTCTCTCACTTCGTCATC
TCTACAAGGTGGTGAGGTGGGGGGACCTGACTCTGGGAACTTGAAGGGGGGTATGACCAATTGCACTCTT
CCACATAGAAGCCTTGATATACAACACACAACTCTATATAGCAATAATAGCACTGCAAACAAATCTTCTG
TTAATTCCATGGACCAGCCGGCACTTCAAGGAAGCAGCAGGTTATCACCTAGTACAGACTCCAGCTCTAA
CTTGACAAATGTGAAGTTAGAAGTCAAAAAGTCTCCTCTGTCTTCCATTCTTTTCAGTGCTTTAGACTCT
GATACAAGGATAACAGCTTTACTGAGGCGGCAGGCTGATATTGAGATCCGTGCCCGAAGGTTACAGAAGC
GATTACAGGTTGTGCAAGCCAAGCAGGTGGAGAGACATTTACAGCACCAACTGGGTGGATTTTTGGAGAC
GACATTGAGTAAACTGCCAAACTTGGAATCCTTAAGGTCCCGGAGCCAGTTGATGTTGACCCGAAAGGCT
GAAGCTGCCTTGAGAAAAGCTGCCAGTGAGTCTGCCACTTCAGAGGGACTTAGCAACTTTTTGAAAAGTG
ATTCAATTTCAGAAGAATTGGAGAGATTTACAGCTAGTGGCATAGCCAACCTGAGGTGCAGTGAGCAAGC
GTTTGATTCGGATGTCACAGACAGTAGTTCCGGAGGGGAGTCTGACATTGAAGAGGAAGAACTGACTCGA
GCTGATCCTGAGCAATGCCATGTGCCCCTGAAACGTAGGTCTGAATGGAGATGGGCTGCAGACCGAGCAG
CTATTGTCAGCCGCTGGAACTGGCTTCAGGCCCATGTTTCTGACTTGGAATATCGAATTCGTCAGCAAAC
AGATATTTACAAACAGATACGTGCTAATAAGGGGTTGATAGTCCTTGGGGAGGCACCTTTCCCAGATCAT
ACAACAGACTTACTTTCACTTAGTTCTGAGGTGAAGACAGATCATGGGAGAGATAAATTGATTGAGTCTG
TTTCTCAGCCATCAGAAAACCATGGTATCCTTGTTAGTAATATTACAGAGTCATTGTCTACCAAATCATG
TGGAGCACCGCGACCTGTCAATGGAGTTGTTAACAGTCTTCAGCCTGTCCTGGCAGACCAAGTTCCAGGT
GACAGCTCTGATGCTGAGGAACAATTACATAAAAAGCAAAGGCTGAATTTAGTTTCTTCATCTGATGGCA
CGTGTGTCGCAGCCCGAACCCGGCCTGTACTGACCTGTAAGAAACGGAGGCTTGTTAGGCCCAGCAGCAT
CGTTCCTCTTTCTAAGAAGGTTCACCGTAATGTCCGCTCTGGCTGTGATGTGAATCCCTCTTGTGCACTG
TGTGGTTCAGGCAGTGTGAACACCATGCCTCCTGAAATACACTATGAAGCACCTCTCTTAGAGCGTCTTT
CCCAGTTGGACTCCTGCGTTCACCCTGTGCTAGCATTTCCAGATGATGTTCCCACAAGCCTGCACTTCCA
GAGCATGCTGAAGTCTCAGTGGCAAAACAAGCCTTTTGACAAGATCAAACCTACCAAAAAGTTTTCTCTT
AAGCACAGAGCGACCATGCCATGCAGTCTGTCAGATCCAGTTCGTAAAGACAGACACAAGTTGGTCAACT
CCTTCCTTACAACAGCCATGTTGAAGCATCACACAGACATGAGCAGTCCGAGCTACTTGACAGCTACCCA
CCATCCACCCCACAGCCCCCTGGTGAGACAGCTCTCCACCTCATCAGACACCTCCACACCCACCAGCTCG
GGCTCACAAGTTGCAGCCAGCACATCTCAGCCAGTGAGGAGGAGAAGGGGAGAGAGCTCATTTGATATTA
ACAACATTGTCATCCCAATGTCTGTTGCTGCAACAACTCGTGTTGAGAAACTACAATACAAAGAAATCCT
TACTCCAAGCTGGCGAGAGGTTGATGTTCAGTCTCTGAAGGGGAGTCCTGATGAAGAGAATGAGGAGATC
GAGGACCTATCTGATGCAGCCTTTGCGGCCCTGCATGCCAAATGTGAGGAGATGGAAAGGGCAAGGTGGC
TGTGGACCACAAGTGTGCCACCCCAGCGTCGGGGCAGCAGGTCTTACAGGTCATCAGACGGCCGGACCAC
CCCTCAGTTGGGCAGTGCCAACCCCTCCACCCCACAGCCTGCGTCCCCTGATGTCAGTAGTAGCCACTCT
CTGTCAGAATTCTCCCATGGTCAATCTCCTAGGAGTCCCATTAGCCCAGAACTACACTCAGCCCCTCTCA
CCCCTGTGGCTCGGGACAGTCTGCGACACCTGGCCAGTGAAGACACCCGATGTTCCACACCAGAGCTGGG
ACTAGATGAACAGTCAGTCCAGCCATGGGAACGACGGACCTTCCCTCTGGCCTACAGTCCCCAGGCAGAA
TGTGAGGAGCAGCTGGATGCACAGGACACGGCAGCCCGCTGCACTCGCCGCACCTCAGGCAGCAAGACTG
GCCGGGAGGCAGAGGTGGCACCCACCTCGCCTCCTGTTGTCCCGCTCAAGAGTCGGCATCTGGCAGCAAC
AGTCACAGCTCAGCGCCCAGCTCACAGATGA

Translation (1036 aa):
MAAMAPALTDAAAEAHHIRFKLAPPSSTLSPGSAENNGNANILISANGTKRKAIAAEDPSLDFRNNPTKE
DLGKLQPLVASYLCSDVTSVPAKESLKLQGVFSKQTVLKSHPLLSQSYELRAELLGRQPVLEFSLENLRT
MNTSGQTALPQAPVNGLAKKLTKSSTHSDHDNSSSLNGGKRSLTSSSLQGGEVGGPDSGNLKGGMTNCTL
PHRSLDIQHTTLYSNNSTANKSSVNSMDQPALQGSSRLSPSTDSSSNLTNVKLEVKKSPLSSILFSALDS
DTRITALLRRQADIEIRARRLQKRLQVVQAKQVERHLQHQLGGFLETTLSKLPNLESLRSRSQLMLTRKA
EAALRKAASESATSEGLSNFLKSDSISEELERFTASGIANLRCSEQAFDSDVTDSSSGGESDIEEEELTR
ADPEQCHVPLKRRSEWRWAADRAAIVSRWNWLQAHVSDLEYRIRQQTDIYKQIRANKGLIVLGEAPFPDH
TTDLLSLSSEVKTDHGRDKLIESVSQPSENHGILVSNITESLSTKSCGAPRPVNGVVNSLQPVLADQVPG
DSSDAEEQLHKKQRLNLVSSSDGTCVAARTRPVLTCKKRRLVRPSSIVPLSKKVHRNVRSGCDVNPSCAL
CGSGSVNTMPPEIHYEAPLLERLSQLDSCVHPVLAFPDDVPTSLHFQSMLKSQWQNKPFDKIKPTKKFSL
KHRATMPCSLSDPVRKDRHKLVNSFLTTAMLKHHTDMSSPSYLTATHHPPHSPLVRQLSTSSDTSTPTSS
GSQVAASTSQPVRRRRGESSFDINNIVIPMSVAATTRVEKLQYKEILTPSWREVDVQSLKGSPDEENEEI
EDLSDAAFAALHAKCEEMERARWLWTTSVPPQRRGSRSYRSSDGRTTPQLGSANPSTPQPASPDVSSSHS
LSEFSHGQSPRSPISPELHSAPLTPVARDSLRHLASEDTRCSTPELGLDEQSVQPWERRTFPLAYSPQAE
CEEQLDAQDTAARCTRRTSGSKTGREAEVAPTSPPVVPLKSRHLAATVTAQRPAHR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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