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Report for CCDS48942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48942.1 Public Mus musculus 11 Atxn7l3 23 108 98 CCDS HistoryNCBI Gene:217218Re-query CCDS DB by CCDS ID:48942.1Re-query CCDS DB by GeneID:217218See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48942.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107132.2 ENSMUSP00000102750.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107132.2Link to Ensembl Protein Viewer:ENSMUSP00000102750.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107132Re-query CCDS DB by Protein ID:ENSMUSP00000102750
Original member NCBI NM_001098836.1 NP_001092306.1 Updated not alive Link to Nucleotide Sequence:NM_001098836.1Link to Protein Sequence:NP_001092306.1Re-query CCDS DB by Nucleotide ID:NM_001098836Re-query CCDS DB by Protein ID:NP_001092306
Current member NCBI NM_001098836.2 NP_001092306.1 Accepted alive Link to Nucleotide Sequence:NM_001098836.2Link to Protein Sequence:NP_001092306.1Re-query CCDS DB by Nucleotide ID:NM_001098836Re-query CCDS DB by Protein ID:NP_001092306Link to BLAST:NP_001092306.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092306.1 354 A2AWT3-2 354 100% 0 0

Chromosomal Locations for CCDS 48942.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102291655 102291803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102291898 102292055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102292136 102292207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102292442 102292485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102292705 102292773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102293067 102293095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102293276 102293342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102293646 102293668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102293844 102293941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102294134 102294305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102294510 102294642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102294949 102294999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGAAAATGGAGGAAATGTCTTTGTCTGGCCTGGATAACAGCAAACTAGAGGCCATCGCTCAGGAGATAT
ATGCTGACCTGGTCGAGGATTCTTGTTTGGGATTCTGCTTTGAAGTACACCGGGCTGTTAAGTGTGGCTA
CTTCTTCCTGGATGATACGGATCCTGACAGCATGAAGGATTTTGAGATCGTGGACCAGCCTGGGTTGGAC
ATCTTTGGACAGGTTTTCAACCAGTGGAAGAGCAAGGAGTGTGTTTGCCCCAATTGCAGCCGCAGTATTG
CTGCTTCCCGCTTTGCCCCCCACCTGGAGAAGTGCCTGGGAATGGGTCGCAACAGCAGCCGAATCGCCAA
CCGTCGGATTGCCAATAGCAACAATATGAACAAGTCTGAGAGTGACCAAGAAGACAACGATGACATCAAT
GACAATGACTGGTCCTATGGCTCAGAGAAGAAAGCCAAGAAGAGAAAATCAGACAAGCTATGGTATCTCC
CATTCCAGAACCCTAATTCCCCTCGAAGATCCAAGTCTCTAAAACACAAAAATGGGGAACTTAGCAACTC
CGATCCTTTTAAGTATAGCAACTCAACTGGGATCAGCTATGAGACCCTGGGTCCAGAGGAGCTGCGGAGC
CTGCTCACCACGCAATGTGGAGTGATTTCTGAACATACCAAGAAGATGTGCACAAGGTCACTACGCTGCC
CGCAGCACACGGATGAACAGAGGCGAACCGTACGGATTTATTTCCTTGGGCCCTCGGCCGTTCTTCCAGA
GGTAGAGAGCTCCTTGGATAACGATGGCTTTGACATGACTGATAGCCAGGCCCTCATCAGCCGGCTTCAG
TGGGACGGCTCTTCTGATCTCTCACCTTCTGATTCAGGCTCCTCCAAGACTAGTGAAAATCAGGGATGGG
GTTTAGGTACCAACAGCTCTGAATCACGGAAAACCAAGAAAAAGAAATCCCATCTGAGCTTGGTAGGGAC
TGCCTCTGGCCTGGGCTCCAACAAGAAGAAAAAGCCAAAGCCACCGGCTCCCCCAACGCCCAGCATCTAT
GATGACATCAACTGA

Translation (354 aa):
MKMEEMSLSGLDNSKLEAIAQEIYADLVEDSCLGFCFEVHRAVKCGYFFLDDTDPDSMKDFEIVDQPGLD
IFGQVFNQWKSKECVCPNCSRSIAASRFAPHLEKCLGMGRNSSRIANRRIANSNNMNKSESDQEDNDDIN
DNDWSYGSEKKAKKRKSDKLWYLPFQNPNSPRRSKSLKHKNGELSNSDPFKYSNSTGISYETLGPEELRS
LLTTQCGVISEHTKKMCTRSLRCPQHTDEQRRTVRIYFLGPSAVLPEVESSLDNDGFDMTDSQALISRLQ
WDGSSDLSPSDSGSSKTSENQGWGLGTNSSESRKTKKKKSHLSLVGTASGLGSNKKKKPKPPAPPTPSIY
DDIN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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