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Report for CCDS48941.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48941.1 Public Mus musculus 11 Atxn7l3 23 108 98 CCDS HistoryNCBI Gene:217218Re-query CCDS DB by CCDS ID:48941.1Re-query CCDS DB by GeneID:217218See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48941.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073234.8 ENSMUSP00000072967.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073234.8Link to Ensembl Protein Viewer:ENSMUSP00000072967.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000073234Re-query CCDS DB by Protein ID:ENSMUSP00000072967
Original member Current member EBI ENSMUST00000107134.7 ENSMUSP00000102752.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107134.7Link to Ensembl Protein Viewer:ENSMUSP00000102752.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107134Re-query CCDS DB by Protein ID:ENSMUSP00000102752
Original member NCBI NM_001098837.1 NP_001092307.1 Updated not alive Link to Nucleotide Sequence:NM_001098837.1Link to Protein Sequence:NP_001092307.1Re-query CCDS DB by Nucleotide ID:NM_001098837Re-query CCDS DB by Protein ID:NP_001092307
Current member NCBI NM_001098837.2 NP_001092307.1 Accepted alive Link to Nucleotide Sequence:NM_001098837.2Link to Protein Sequence:NP_001092307.1Re-query CCDS DB by Nucleotide ID:NM_001098837Re-query CCDS DB by Protein ID:NP_001092307Link to BLAST:NP_001092307.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092307.1 347 A2AWT3-1 347 100% 0 0

Chromosomal Locations for CCDS 48941.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102291655 102291803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102291898 102292055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102292136 102292207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102292442 102292485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102292705 102292773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102293067 102293095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102293276 102293321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102293646 102293668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102293844 102293941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102294134 102294305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102294510 102294642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102294949 102294999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGAAAATGGAGGAAATGTCTTTGTCTGGCCTGGATAACAGCAAACTAGAGGCCATCGCTCAGGAGATAT
ATGCTGACCTGGTCGAGGATTCTTGTTTGGGATTCTGCTTTGAAGTACACCGGGCTGTTAAGTGTGGCTA
CTTCTTCCTGGATGATACGGATCCTGACAGCATGAAGGATTTTGAGATCGTGGACCAGCCTGGGTTGGAC
ATCTTTGGACAGGTTTTCAACCAGTGGAAGAGCAAGGAGTGTGTTTGCCCCAATTGCAGCCGCAGTATTG
CTGCTTCCCGCTTTGCCCCCCACCTGGAGAAGTGCCTGGGAATGGGTCGCAACAGCAGCCGAATCGCCAA
CCGTCGGATTGCCAATAGCAACAATATGAACAAGTCTGAGAGTGACCAAGAAGACAACGATGACATCAAT
GACAATGACTGGTCCTATGGCTCAGAGAAGAAAGCCAAGAAGAGAAAATCAGACAAGAACCCTAATTCCC
CTCGAAGATCCAAGTCTCTAAAACACAAAAATGGGGAACTTAGCAACTCCGATCCTTTTAAGTATAGCAA
CTCAACTGGGATCAGCTATGAGACCCTGGGTCCAGAGGAGCTGCGGAGCCTGCTCACCACGCAATGTGGA
GTGATTTCTGAACATACCAAGAAGATGTGCACAAGGTCACTACGCTGCCCGCAGCACACGGATGAACAGA
GGCGAACCGTACGGATTTATTTCCTTGGGCCCTCGGCCGTTCTTCCAGAGGTAGAGAGCTCCTTGGATAA
CGATGGCTTTGACATGACTGATAGCCAGGCCCTCATCAGCCGGCTTCAGTGGGACGGCTCTTCTGATCTC
TCACCTTCTGATTCAGGCTCCTCCAAGACTAGTGAAAATCAGGGATGGGGTTTAGGTACCAACAGCTCTG
AATCACGGAAAACCAAGAAAAAGAAATCCCATCTGAGCTTGGTAGGGACTGCCTCTGGCCTGGGCTCCAA
CAAGAAGAAAAAGCCAAAGCCACCGGCTCCCCCAACGCCCAGCATCTATGATGACATCAACTGA

Translation (347 aa):
MKMEEMSLSGLDNSKLEAIAQEIYADLVEDSCLGFCFEVHRAVKCGYFFLDDTDPDSMKDFEIVDQPGLD
IFGQVFNQWKSKECVCPNCSRSIAASRFAPHLEKCLGMGRNSSRIANRRIANSNNMNKSESDQEDNDDIN
DNDWSYGSEKKAKKRKSDKNPNSPRRSKSLKHKNGELSNSDPFKYSNSTGISYETLGPEELRSLLTTQCG
VISEHTKKMCTRSLRCPQHTDEQRRTVRIYFLGPSAVLPEVESSLDNDGFDMTDSQALISRLQWDGSSDL
SPSDSGSSKTSENQGWGLGTNSSESRKTKKKKSHLSLVGTASGLGSNKKKKPKPPAPPTPSIYDDIN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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