NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48935.1 Public Mus musculus 11 Mlx 23 108 98 CCDS HistoryNCBI Gene:21428Re-query CCDS DB by CCDS ID:48935.1Re-query CCDS DB by GeneID:21428See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48935.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107302.7 ENSMUSP00000102923.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107302.7Link to Ensembl Protein Viewer:ENSMUSP00000102923.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107302Re-query CCDS DB by Protein ID:ENSMUSP00000102923
Original member Current member NCBI NM_001159385.1 NP_001152857.1 Accepted alive Link to Nucleotide Sequence:NM_001159385.1Link to Protein Sequence:NP_001152857.1Re-query CCDS DB by Nucleotide ID:NM_001159385Re-query CCDS DB by Protein ID:NP_001152857Link to BLAST:NP_001152857.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001152857.1 244 O08609-3 244 99.5902% 0 1

Chromosomal Locations for CCDS 48935.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 101087326 101087367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101087754 101087790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101088236 101088325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101088598 101088704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101088933 101089032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101089219 101089318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101089668 101089869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 101091109 101091165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGACGGAGCCGGGCGCCTCTCCGGAGGACCCTTGGGTCAAGGTCGAGTATGCCTACAGTGACAACAGCC
TGGATCCTGGGCTTTTTGTAGAAAGCACCCACAAGGGGAGTGTAGTGTCCAGAGCTAATAGCATCGGCTC
CACCAGTGCCTCTTCTGTCCCCAACACAGATGATGAGGACAGTGATTATCAGCAGGAGTCCTACAAGGAG
TCCTACAAAGACCGGAGGCGGCGTGCGCACACTCAGGCTGAACAGAAGAGAAGGGATGCTATTAAGAGAG
GCTATGATGACCTTCAGACCATTGTCCCTACCTGCCAGCAGCAGGATTTCTCCATTGGCTCCCAAAAACT
CAGCAAAGCCATCGTTCTACAGAAGACCATTGACTACATCCAGTTTTTACACAAGGAGAAGAAAAAGCAG
GAGGAAGAAGTATCCACACTGCGCAAGGACGTCACAGCCTTGAAGATAATGAAAGTGAACTATGAGCAAA
TCGTGAAGGCACATCAGGACAACCCTCATGAGGGAGAGGACCAGGTCTCTGACCAGGTCAAGTTCAACGT
CTTTCAAGGCATCATGGACTCCCTCTTCCAGTCTTTCAACGCCTCTATCTCTGTGGCCAGCTTCCAGGAG
CTCTCAGCTTGTGTCTTCAGCTGGATTGAGGAACACTGTGAGCCACAGACTCTACGAGAGATTGTGATCG
GTGTCCTTCATCAGTTGAAAAACCAACTCTACTGA

Translation (244 aa):
MTEPGASPEDPWVKVEYAYSDNSLDPGLFVESTHKGSVVSRANSIGSTSASSVPNTDDEDSDYQQESYKE
SYKDRRRRAHTQAEQKRRDAIKRGYDDLQTIVPTCQQQDFSIGSQKLSKAIVLQKTIDYIQFLHKEKKKQ
EEEVSTLRKDVTALKIMKVNYEQIVKAHQDNPHEGEDQVSDQVKFNVFQGIMDSLFQSFNASISVASFQE
LSACVFSWIEEHCEPQTLREIVIGVLHQLKNQLY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH