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Report for CCDS48913.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48913.1 Public Mus musculus 11 Krtap4-25 23 108 98 CCDS HistoryNCBI Gene:100040248Re-query CCDS DB by CCDS ID:48913.1Re-query CCDS DB by GeneID:100040248See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48913.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092695.4 ENSMUSP00000090369.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092695.4Link to Ensembl Protein Viewer:ENSMUSP00000090369.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000092695Re-query CCDS DB by Protein ID:ENSMUSP00000090369
Original member Current member NCBI NM_001126320.2 NP_001119792.1 Accepted alive Link to Nucleotide Sequence:NM_001126320.2Link to Protein Sequence:NP_001119792.1Re-query CCDS DB by Nucleotide ID:NM_001126320Re-query CCDS DB by Protein ID:NP_001119792Link to BLAST:NP_001119792.1

Chromosomal Locations for CCDS 48913.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 99658420 99658926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (507 nt):
ATGGTCAGCTCCTGTTGTGGCTCTGTCTGCTCTGAGGAGGGCTGTGGCCAAGGCTGCTGCCAGCCCAGCT
GCTGCCAGACCACCTGCTGTAGGACCACCTGCTGCCGCCCCAGCTGTTGTGTGTCCAGCTGCTGCAGGCC
TCAGTGCTGCCAGTCTGTGTGTTGCCAGCCTACCTGCTGCCGCCCCAGCTGTTGCCGCCCCAGCTGCTGT
GTGTCCAGCTGCTGCAGACCTAGCTGCTGCCAGTCTGTGTGCTGCCAGCCCACCTGCTGTCGCCCCAGCT
GCTGCCGCCCCAGCTGCTGCATCTCCAGCTGCTGTCAACCCTCCTGTGGTAGCTCCAGCTGTTGTGGTTC
CAGCTGCTGCCGCCCCTGTTGCCGCCCCTGCTGCCGCCCCTGCTGCTGTTTGAGACCAGTCTGTGGTCAG
GTCTGCTGCCAAACCACTTGCTACCGCCCCACTTGTGTCATCTCCACCTGCCCCCGCCCCATGTGCTGTG
CCACCCCCTGCTGCTGA

Translation (168 aa):
MVSSCCGSVCSEEGCGQGCCQPSCCQTTCCRTTCCRPSCCVSSCCRPQCCQSVCCQPTCCRPSCCRPSCC
VSSCCRPSCCQSVCCQPTCCRPSCCRPSCCISSCCQPSCGSSSCCGSSCCRPCCRPCCRPCCCLRPVCGQ
VCCQTTCYRPTCVISTCPRPMCCATPCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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