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Report for CCDS48900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48900.1 Public Mus musculus 11 Rpl19 23 108 98 CCDS HistoryNCBI Gene:19921Re-query CCDS DB by CCDS ID:48900.1Re-query CCDS DB by GeneID:19921See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48900.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092425.10 ENSMUSP00000103181.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092425.10Link to Ensembl Protein Viewer:ENSMUSP00000103181.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000092425Re-query CCDS DB by Protein ID:ENSMUSP00000103181
Original member Current member NCBI NM_001159483.1 NP_001152955.1 Accepted alive Link to Nucleotide Sequence:NM_001159483.1Link to Protein Sequence:NP_001152955.1Re-query CCDS DB by Nucleotide ID:NM_001159483Re-query CCDS DB by Protein ID:NP_001152955Link to BLAST:NP_001152955.1

Chromosomal Locations for CCDS 48900.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98027824 98027929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98028346 98028468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98029395 98029515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98029775 98029885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98030271 98030394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGCTCAGGCTACAGAAGAGGCTTGCCTCTAGTGTCCTCCGCTGCGGGAAAAAGAAGGTCTGGTTGGATC
CCAATGAGACCAATGAAATCGCCAATGCCAACTCCCGTCAGCAGATCAGGAAGCTGATCAAGGATGGGCT
GATCATCCGCAAGCCTGTGACTGTCCATTCCCGGGCTCGTTGCCGGAAAAACACCCTGGCCCGACGGAAG
GGCAGGCATATGGGCATAGGGAAGAGGAAGGGTACTGCCAATGCTCGGATGCCTGAGAAGGTGACCTGGA
TGAGAAGGATGAGGATCCTGCGCCGGCTTCTCAGGAGATACCGGGAATCCAAGAAGATTGACCGCCATAT
GTATCACAGCCTGTACCTGAAGGTCAAAGGGAATGTGTTCAAAAACAAGCGCATCCTCATGGAGCACATC
CACAAGCTGAAGGCAGACAAGGCCCGCAAGAAGCTCCTGGCTGACCAGGCTGAGGCTCGCAGGTCTAAGA
CCAAGGAAGCACGAAAGCGCCGGGAGGAGCGCCTCCAGGCCAAGAAGGAAGAGATCATCAAGACTCTGTC
CAAGGAGGAGGAGACCAAGAAATAA

Translation (194 aa):
MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRK
GRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHI
HKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEETKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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