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Report for CCDS48888.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48888.1 Public Mus musculus 11 Xylt2 23 108 98 CCDS HistoryNCBI Gene:217119Re-query CCDS DB by CCDS ID:48888.1Re-query CCDS DB by GeneID:217119See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48888.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116349.8 ENSMUSP00000112052.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116349.8Link to Ensembl Protein Viewer:ENSMUSP00000112052.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116349Re-query CCDS DB by Protein ID:ENSMUSP00000112052
Original member Current member NCBI NM_145828.3 NP_665827.2 Accepted alive Link to Nucleotide Sequence:NM_145828.3Link to Protein Sequence:NP_665827.2Re-query CCDS DB by Nucleotide ID:NM_145828Re-query CCDS DB by Protein ID:NP_665827Link to BLAST:NP_665827.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_665827.2 865 Q9EPL0 865 100% 0 0

Chromosomal Locations for CCDS 48888.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 94664587 94664909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94666198 94666531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94667099 94667294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94667584 94667846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94668061 94668237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94668325 94668541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94668727 94668807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94669441 94669643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94669907 94670082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94670308 94670800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94677273 94677407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2598 nt):
ATGGTGGCGAGCGCGCGGGTGCAGAAGCTGGTGCGGCGCTACAAGCTGGCGATCGCCACCGCACTGGCCA
TCCTGCTGCTGCAGGGCCTGGTGGTGTGGAGCTTCAGCGGCCTGGAGGAGGACGAGCCGGGCGAGAAAGG
GAGGCAGAGGAAGCCACGGCCACTAGACCCTGGGGAGGGCTCTAAGGACACAGACAGCTCTGCGGGGCGT
AGGGGCAGCGCTGGGAGAAGGCACGGACGCTGGCGGGGCCGCGCTGAGAGCCCAGGTGTGCCCGTGGCCA
AGGTGGTGCGGGCAGTAACCAGTCGGCAGAGGGCCAGCCGACGGGTGCCCCCGGCCCCACCTCCGGAGGC
ACCAGGCCGCCAGAACCTGAGCGGAGCGGCGGCCGGGGAAGCACTGATAGGGGCCCCAGGCTTCCCACAG
CATGGAGACACAGGGAGTGTGGAGGGTGCCCCCCAGCCCACGGACAACACCTTCACTCCGAAGTGTGAGA
TTGTGGGCAAGGACGCACTGTCAGCACTGGCCCGGGCCAGCACCAAGCAGTGTCAACAGGAGATCGCTAA
TGTAGTGTGCCTGCACCAAGCTGGGAACCTAATGCCCAAGTCTGTGCCCCGGCACTGCCAGCTGGCTGGC
AAGATGAGCCCTGGCGTCCAATGGGAAGAGATCCGGGCCCAGCAGCCTGTTGGTGGCCCTCCAGTACGCA
TCGCCTACATGCTGGTGGTTCACGGCCGTGCTATCCGCCAGCTGAAGCGTCTTCTGAAGGCCGTCTACCA
TGAGCAACACTTCTTTTATATACATGTGGACAAGCGTTCCAACTACCTGTACCGGGAGGTAGTGGAACTG
GCCCAGCACTACGAGAATGTGCGGGTGACACCTTGGCGCATGGTCACCATCTGGGGCGGGGCCAGCCTTC
TGAGGATGTATCTGAGGAGCATGAAGGACCTTCTGGAAATTCCTGGCTGGACCTGGGACTTCTTCATCAA
CCTGAGTGCCACTGACTATCCAACGAGGACGAATGAGGAGCTGGTAGCATTCTTATCCAAGAACCGGGAC
AAGAATTTCCTCAAGTCACATGGGCGAGACAATTCCAGGTTCATTAAGAAGCAAGGCCTGGACCGGCTTT
TCCATGAGTGTGATTCCCACATGTGGCGCCTGGGTGAACGGCAGATCCCGGCAGGCATTGTGGTGGATGG
TGGCTCTGACTGGTTTGTGCTGACACGCAGCTTTGTGGAATATGTGGTGTATACAGATGACCCCCTCGTG
GCCCAGCTTCGCCAGTTCTATACATACACATTGCTTCCGGCTGAGTCATTCTTCCACACAGTGCTGGAGA
ACAGCCCGGCCTGTGCGAGCCTGGTGGACAACAACCTGCGGGTCACCAACTGGAACCGCAAGCTGGGCTG
CAAATGCCAGTACAAGCACATCGTGGACTGGTGCGGCTGCTCCCCCAACGACTTCAAGCCACAGGACTTC
CTGAGGCTTCAGCAAGTCTCCAGACCCACCTTCTTTGCCCGGAAGTTCGAGTCGACTGTGAACCAGGAAG
TCCTGGAAATTTTGGACTTCCATCTATATGGCAGCTACCCACCCAGCACACCAGCCCTCAAAGCCTACTG
GGAGAACATCTACGACGTGGCCGATGGCCCTGGCGGACTCAGCGACGTCCTACTCACAGCCTACACAGCC
TTTGCCCGTCTCAGCCTGCGTCATGCTGCCACTGCTGTATCCCCACTGGCCACTGCAGTCTGCAGGTTTG
AGCCCAGGGGGTTGCCGTCCAGCGTGCACCTGTATTTCTATGACGACCATTTCCAGGGCTACCTGGTGAC
GCAGGCGGTGCAGCCCTCAGCCCAGGGGCCAGCAGAGACACTTGAGATGTGGCTGATGCCCCAGAGGTCG
CTGAAGCTGTTGGGGCACAGTGACCAGGCCAGCCGGCTCCAGAGTCTGGAGGTTGGTACTGAGTGGGACC
CCAAAGAACGTCTCTTCCGGAACTTTGGGGGCCTGCTGGGACCACTGGATGAGCCCGTAGCCATGCAGCG
CTGGGCCCGGGGCCCCAACCTCACAGCCACTGTGGTCTGGATTGACCCCACCTATGTTGTGGCCACATCG
TATGACATCACGGTAGATGCGGATACCGAAGTCACGCAGTACAAGCCTCCACTGAGCCTGCCACTGCGGC
CGGGAGCCTGGACTGTCCGCTTGCTTCAGTTCTGGGAACCCCTGGGTGAGACCCGCTTCCTCGTGCTGCC
GTTGACGTTCAACCGCAAACTACCTCTCAGGAAAGATGATGCCAGCTGGCTGCATGCGGGACCACCCCAC
AACGAATACATGGAGCAGAGTTTCCAGGGCCTAAGTGGCATCCTGAATCTGCCTCAGGCAGAGGCCCTGG
AGGAGGCTGCCCGGAGGCACACAGAGCTCACGGGTTCTGCACTTGAGGCCTGGACAGATGGGGAACTGAG
CAATTTCTGGTCTGTGGCAGGATTGTGTGCCATAGGACCTTCTGCTTGTCCCTCCCTGGAGCTCTGCAGA
CTGACCAGCTGGAGCTCTCTGTCTCCTGACCCCAAGTCAGAGCTGGGGCCTGTCAAAGCTGACGGGCGAC
TCAGGTAG

Translation (865 aa):
MVASARVQKLVRRYKLAIATALAILLLQGLVVWSFSGLEEDEPGEKGRQRKPRPLDPGEGSKDTDSSAGR
RGSAGRRHGRWRGRAESPGVPVAKVVRAVTSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALIGAPGFPQ
HGDTGSVEGAPQPTDNTFTPKCEIVGKDALSALARASTKQCQQEIANVVCLHQAGNLMPKSVPRHCQLAG
KMSPGVQWEEIRAQQPVGGPPVRIAYMLVVHGRAIRQLKRLLKAVYHEQHFFYIHVDKRSNYLYREVVEL
AQHYENVRVTPWRMVTIWGGASLLRMYLRSMKDLLEIPGWTWDFFINLSATDYPTRTNEELVAFLSKNRD
KNFLKSHGRDNSRFIKKQGLDRLFHECDSHMWRLGERQIPAGIVVDGGSDWFVLTRSFVEYVVYTDDPLV
AQLRQFYTYTLLPAESFFHTVLENSPACASLVDNNLRVTNWNRKLGCKCQYKHIVDWCGCSPNDFKPQDF
LRLQQVSRPTFFARKFESTVNQEVLEILDFHLYGSYPPSTPALKAYWENIYDVADGPGGLSDVLLTAYTA
FARLSLRHAATAVSPLATAVCRFEPRGLPSSVHLYFYDDHFQGYLVTQAVQPSAQGPAETLEMWLMPQRS
LKLLGHSDQASRLQSLEVGTEWDPKERLFRNFGGLLGPLDEPVAMQRWARGPNLTATVVWIDPTYVVATS
YDITVDADTEVTQYKPPLSLPLRPGAWTVRLLQFWEPLGETRFLVLPLTFNRKLPLRKDDASWLHAGPPH
NEYMEQSFQGLSGILNLPQAEALEEAARRHTELTGSALEAWTDGELSNFWSVAGLCAIGPSACPSLELCR
LTSWSSLSPDPKSELGPVKADGRLR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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