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Report for CCDS48752.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48752.1 Public Mus musculus 11 Spmip7 23 108 98 CCDS HistoryNCBI Gene:73862Re-query CCDS DB by CCDS ID:48752.1Re-query CCDS DB by GeneID:73862See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48752.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109678.2 ENSMUSP00000105300.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109678.2Link to Ensembl Protein Viewer:ENSMUSP00000105300.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109678Re-query CCDS DB by Protein ID:ENSMUSP00000105300
Original member NCBI NM_028669.1 NP_082945.1 Updated not alive Link to Nucleotide Sequence:NM_028669.1Link to Protein Sequence:NP_082945.1Re-query CCDS DB by Nucleotide ID:NM_028669Re-query CCDS DB by Protein ID:NP_082945
Current member NCBI NM_028669.2 NP_082945.1 Accepted alive Link to Nucleotide Sequence:NM_028669.2Link to Protein Sequence:NP_082945.1Re-query CCDS DB by Nucleotide ID:NM_028669Re-query CCDS DB by Protein ID:NP_082945Link to BLAST:NP_082945.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082945.1 149 Q5NC83-2 149 100% 0 0

Chromosomal Locations for CCDS 48752.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 11490221 11490288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11495415 11495456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11496401 11496508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11509230 11509337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 11514977 11515100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (450 nt):
ATGGTCGGAGGACTTTGGGACAGATTTCAGACAAGATTGTTCTCAGCGCCAGCCAAACCAATCAATTTTG
TGAGTCCAAGTACTAGGAGTAAATACATTCCTCTGTATACTGGTCATGTGCAGAGCACAGACGCTGACAA
TGTGGACAATCCCTACGGAGATATCAAGTCTGTGGCCAGTCCTAGGCACTCTAAACTTCAGTATACAAAC
TCAAGCCGGTCTGCGAATATCCCAGGATACACTGGCAAGGTTCATTTCACAGCCACCCACCCAACAAATT
CTAATATTCCATCAAGAGAGCCATCAGCAGATTCGGAGATGAACCGCCTCTTACTACAAGAAATGAGAGT
CGACCGCTTCCGTCACCAGGGCCCAATGTCCCAAATGGTGACAACTGTGAAGCCCTACAACCCTTTTAAC
AAGAAGGAAAAAGAAACCCTTGAGTACTGA

Translation (149 aa):
MVGGLWDRFQTRLFSAPAKPINFVSPSTRSKYIPLYTGHVQSTDADNVDNPYGDIKSVASPRHSKLQYTN
SSRSANIPGYTGKVHFTATHPTNSNIPSREPSADSEMNRLLLQEMRVDRFRHQGPMSQMVTTVKPYNPFN
KKEKETLEY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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