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Report for CCDS48701.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48701.1 Public Mus musculus 10 Cand1 23 108 98 CCDS HistoryNCBI Gene:71902Re-query CCDS DB by CCDS ID:48701.1Re-query CCDS DB by GeneID:71902See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48701.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020315.12 ENSMUSP00000020315.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020315.12Link to Ensembl Protein Viewer:ENSMUSP00000020315.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020315Re-query CCDS DB by Protein ID:ENSMUSP00000020315
Original member Current member NCBI NM_027994.1 NP_082270.1 Accepted alive Link to Nucleotide Sequence:NM_027994.1Link to Protein Sequence:NP_082270.1Re-query CCDS DB by Nucleotide ID:NM_027994Re-query CCDS DB by Protein ID:NP_082270Link to BLAST:NP_082270.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082270.1 1230 Q6ZQ38 1230 100% 0 0

Chromosomal Locations for CCDS 48701.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 119202981 119203205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119206716 119206823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119208027 119208191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119208273 119208442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119209974 119210069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119210655 119212148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119212440 119212581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119213547 119213839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119215202 119215347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119216143 119216248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119216451 119216707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119217941 119218064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119219590 119219744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119227403 119227546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 119239641 119239708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3693 nt):
ATGGCGAGCGCTTCGTACCACATCTCCAACTTGCTGGAGAAAATGACATCCAGCGACAAGGACTTCAGGT
TCATGGCGACCAACGACCTGATGACAGAGCTGCAGAAAGACTCTATCAAGCTGGACGATGACAGCGAGAG
GAAAGTTGTGAAGATGATTCTCAGGTTGCTGGAGGATAAAAATGGCGAAGTGCAGAACTTAGCTGTCAAA
TGCCTTGGCCCTTTGGTGAGTAAAGTGAAAGAGTACCAAGTGGAGACGATCGTGGACACCCTCTGCACCA
ACATGCTTTCTGACAAGGAGCAGCTGCGAGACATTTCCAGCATCGGCCTGAAAACAGTAATTGGAGAACT
TCCGCCAGCTTCCAGTGGCTCTGCATTAGCTGCTAATGTATGTAAAAAGATTACTGGACGCCTTACCAGT
GCAATAGCAAAGCAGGAAGATGTTTCTGTTCAGCTCGAAGCCTTGGATATCATGGCTGACATGTTGAGCA
GGCAAGGAGGACTGCTTGTTAATTTCCACCCTTCAATTCTGACCTGTCTGCTTCCCCAGCTGACCAGCCC
TAGACTTGCAGTGAGGAAAAGAACAATTATTGCTCTTGGCCACCTAGTTATGAGCTGCGGAAATATAGTT
TTTGTAGACCTTATTGAACATCTGTTGTCAGAGTTGTCCAAAAATGACTCCATGTCAACAACAAGGACCT
ACATACAGTGTATTGCTGCTATTAGTAGGCAAGCTGGCCATAGAATAGGTGAATACCTTGAAAAGATAAT
TCCTTTGGTGGTAAAATTTTGTAATGTAGATGATGATGAATTAAGAGAATACTGCATTCAAGCTTTTGAA
TCATTTGTGAGAAGATGCCCTAAAGAAGTTTATCCTCATGTTTCTACCATTATAAACATTTGTCTAAAAT
ACCTTACCTATGATCCAAATTACAATTACGATGATGAAGATGAAGATGAGAATGCTATGGATGCTGACGG
TGGGGACGACGATGACCAAGGGAGTGACGATGAATATAGTGACGATGACGACATGAGTTGGAAAGTGAGA
CGCGCGGCTGCTAAGTGCCTGGACGCTGTAGTTAGCACACGGCATGAGATGCTCCCGGAGTTCTACAAGA
CTGTCTCTCCTGCGCTGATAGCCAGATTTAAAGAGCGGGAAGAAAATGTAAAGGCAGATGTTTTTCATGC
ATACCTGTCTCTTCTGAAACAAACTCGTCCAGTGCAAAGTTGGCTGTGTGACCCTGACGCAATGGAGCAG
GGAGACACGCCCCTAACAATGCTGCAGAGTCAGGTTCCCAACATTGTTAAAGCCCTGCACAAGCAGATGA
AAGAGAAGAGTGTGAAGACCCGACAGTGTTGCTTTAACATGTTAACTGAGCTGGTAAATGTGCTGCCGGG
AGCACTAACCCAGCACATTCCTGTACTGGTACCAGGAATCATTTTCTCACTGAATGATAAGTCCAGCTCA
TCAAACCTGAAGATTGATGCGCTGTCGTGTCTGTATGTCATCCTCTGTAACCACTCTCCTCAAGTTTTCC
ATCCTCATGTTCAGGCTCTGGTCCCTCCGGTGGTGGCCTGTGTGGGAGACCCGTTTTACAAGATCACTTC
AGAAGCCCTTCTTGTCACTCAGCAGCTTGTCAAAGTGATCCGTCCTCTAGACCAGCCCTCTTCGTTCGAT
GCAACGCCTTACATCAAAGATCTCTTCACCTGCACAATTAAGCGCTTAAAAGCAGCTGACATTGATCAAG
AAGTCAAGGAAAGGGCTATTTCCTGTATGGGACAGATTATTTGCAATCTTGGAGACAATTTGGGTCCTGA
TTTATCAAATACCCTACAGATTTTCTTGGAGAGACTCAAGAATGAGATTACCCGGCTAACGACCGTCAAA
GCGCTGACCCTGATTGCTGGGTCACCTTTGAAGATAGATCTGAGGCCTGTGCTGGGAGAGGGAGTCCCCA
TCCTTGCTTCATTCCTCAGGAAAAATCAGAGAGCTTTGAAACTGGGGACCCTCTCTGCCCTGGATATTCT
CATTAAGAACTACAGTGACAGCCTGACGGCCGCCATGATTGACGCAGTTCTGGATGAGCTCCCCCCCCTC
ATCAGCGAGAGCGATATGCACGTGTCGCAGATGGCTATCAGCTTCCTCACCACCCTGGCCAAGGTCTATC
CCTCCTCCCTGTCCAAGATAAGCGGATCTATCCTCAATGAACTGATTGGACTTGTGAGATCGCCTCTACT
GCAGGGAGGAGCGCTCAGTGCCATGCTAGACTTTTTCCAAGCTCTGGTTGTCACTGGAACAAACAATCTA
GGGTACATGGACTTGCTGCGCATGCTAACGGGTCCAGTTTATTCTCAGAGCACTGCTCTCACTCATAAGC
AGTCTTATTATTCCATTGCCAAATGTGTAGCTGCCCTTACTCGAGCTTGCCCTAAAGAGGGACCCGCCGT
AGTAGGTCAGTTTATTCAAGATGTCAAGAACTCAAGGTCTACAGATTCCATTCGTCTCTTAGCACTCCTT
TCTCTTGGAGAAGTTGGACACCATATTGACTTAAGTGGGCAGTTGGAATTAAAATCTGTAATATTAGAGG
CTTTCTCATCCCCTAGTGAAGAAGTCAAATCAGCTGCGTCCTATGCATTAGGCAGCATTAGTGTAGGCAA
CCTTCCTGAGTATCTGCCCTTTGTACTGCAAGAAATAACCAGCCAGCCCAAAAGGCAGTATCTTCTGCTT
CACTCTTTGAAGGAGATCATTAGCTCTGCATCGGTGGCAGGCCTTAAGCCATATGTTGAGAACATCTGGG
CCTTGCTGCTAAAGCACTGTGAGTGTGCGGAGGAAGGCACCAGGAATGTCGTGGCTGAATGTCTAGGGAA
GCTCACTCTTATTGATCCTGAAACTCTCCTCCCACGGCTTAAAGGGTATTTGATATCAGGGTCATCATAT
GCCAGGAGCTCGGTGGTTACAGCTGTGAAGTTCACGATTTCTGATCATCCTCAGCCTATTGATCCACTGT
TGAAGAACTGCATAGGTGACTTTCTAAAAACTTTGGAAGACCCAGATTTGAACGTAAGAAGAGTGGCCTT
GGTCACATTCAATTCTGCGGCCCATAACAAGCCATCACTGATACGGGACCTTCTGGACTCAGTTCTTCCA
CATCTTTACAATGAGACAAAAGTTAGGAAGGAACTTATAAGAGAGGTAGAAATGGGTCCATTTAAACACA
CGGTTGATGACGGTCTAGACATTAGAAAGGCAGCTTTTGAGTGTATGTATACACTTCTAGACAGCTGTCT
TGATAGACTGGATATCTTTGAATTTCTAAATCATGTTGAAGATGGTTTGAAGGACCATTATGATATTAAG
ATGCTAACATTTTTAATGTTGGTACGACTGTCTACCCTCTGTCCAAGTGCAGTACTACAAAGGCTGGACC
GACTTGTTGAGCCACTGCGTGCTACGTGTACAACTAAGGTAAAGGCAAACTCTGTAAAGCAGGAGTTTGA
AAAGCAAGATGAGCTAAAGCGGTCTGCCATGAGGGCAGTGGCGGCTTTGTTAACCATTCCAGAGGCAGAG
AAGAGCCCTCTTATGAGTGAATTCCAGTCACAGATCAGCTCCAACCCGGAGCTGGCAGCCATCTTTGAAA
GTATCCAGAAAGATTCTTCGTCCACCAACTTGGAATCAATGGACACGAGTTAG

Translation (1230 aa):
MASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILRLLEDKNGEVQNLAVK
CLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTS
AIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIV
FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFE
SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVR
RAAAKCLDAVVSTRHEMLPEFYKTVSPALIARFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQ
GDTPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSS
SNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFD
ATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGPDLSNTLQIFLERLKNEITRLTTVK
ALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPL
ISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNL
GYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALL
SLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLL
HSLKEIISSASVAGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSY
ARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDSVLP
HLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYDIK
MLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAE
KSPLMSEFQSQISSNPELAAIFESIQKDSSSTNLESMDTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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