NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48549.1 Public Mus musculus 10 Cep57l1 23 108 98 CCDS HistoryNCBI Gene:103268Re-query CCDS DB by CCDS ID:48549.1Re-query CCDS DB by GeneID:103268See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48549.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019951.15 ENSMUSP00000019951.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019951.15Link to Ensembl Protein Viewer:ENSMUSP00000019951.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000019951Re-query CCDS DB by Protein ID:ENSMUSP00000019951
Original member Current member EBI ENSMUST00000186239.6 ENSMUSP00000139509.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186239.6Link to Ensembl Protein Viewer:ENSMUSP00000139509.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186239Re-query CCDS DB by Protein ID:ENSMUSP00000139509
Original member Current member NCBI NM_029132.2 NP_083408.1 Accepted alive Link to Nucleotide Sequence:NM_029132.2Link to Protein Sequence:NP_083408.1Re-query CCDS DB by Nucleotide ID:NM_029132Re-query CCDS DB by Protein ID:NP_083408Link to BLAST:NP_083408.1

Chromosomal Locations for CCDS 48549.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 41719695 41719907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41721557 41721701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41722884 41723005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41723861 41723938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41728628 41728714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41729331 41729408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41730999 41731115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41740840 41740961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41743042 41743221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 41745771 41745918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGGATTCTGAATTATCACAGAGTATGGTTGGGAGCTATCTTAACCCTCCAGAAAGAATGCATCTTCCAT
CATTCACGCAAAATGAAGCATTTCAGAATTGCCACCCTGGGACCCCTCCTAAAATGTTTAATAGTCCAAA
CAACCAAGCACTTGTTTCAGCATTAAAAACTCTCCAGGAAAAGATTCGTCGTCTCGAGCTGGAGAGGACA
CAGGCTGAAGACAACCTGAACCTTCTGTCCAGAGAAGCAGCGCAGTATAAGAAGGCCCTAGAGGAGGAGA
CCAACGAGAGGAACCTCGCACACCAGGAGCTGATTAAACAAAAGAAAGATATAAGCATACAATTAAGCTC
AGCCCAGTCTCGTTGTATTCTTCTAGAGAAGCAATTGGAATATACAAAAAGAATGGTTCTCAATGTAGAA
CGAGAAAAGACTATGATCCTAGAACAACAGGCCCAGCTTCAAAGGGAAAAAGAACAAGATCAGATGAAGC
TGCACGCTAAACTTGAAAAGCTCCATGTCCTAGAGAAAGAGTGTCTGAGACTGACGGCGACTCGGCAGAC
TGCGGAGGACAAGATTAAATGTCTAGAAGAAAAACTGAAGGAGGAGGAGCATCAGCGCAGGCTGTTTCAA
GACAGAGCCTGTGAGCTTCAAACTGGATTTGAAATCAGCAAAATTTTAATGTCCACAGTTTCGAATTCAA
AGCATTGTAAGGAAAAGAAGAAACAGCCAAAGAAAACTAACTGCTTAAAACGAGAGCCGCCTCAGCAAAG
GGACCACAAGTTTAGAACACCAACTTTTGAGAGAAAGAAGCCTTTCAGAACAACTTCCCAGGCTAGAGCT
AACCCTCAGAGCTCAGGAGAGCCCGTTTCCATTTGTGACAGTTTGTCTGAACTCTTGATGACAATGGAAG
AGGAGCTGGACCAAATGAATATGGAGCACAGAGAGCTCCTGAGACAGATGATGCAGCCTGGGAACCACTC
GGTCTCTGAGGACATAGAGCAGGAGCTGGAGCAGTTAGCCAAGAAGATGGAAAGCAAAGGTGACCAGATC
TCCAAGCTCAAGAAGCATCAAGACAGTGTCCGTAAACTGCAGGAAAAAATTGAGAACTCAAGGATAAATG
AATCTTCAGGTATCCATGGCAACCCTAAAGGATCTAAGAACTTAAAAACCAGCCCCCGGAAATGTGTGAG
TGAAACCAGCTCTTTTCAGAGAGACAGAGGCTTTCAACCAGTGCAGGTCCACAGCCTGCAGTCGAAGCTG
AGGCGCGATGACATCAAGTGGGAGCAGTGA

Translation (429 aa):
MDSELSQSMVGSYLNPPERMHLPSFTQNEAFQNCHPGTPPKMFNSPNNQALVSALKTLQEKIRRLELERT
QAEDNLNLLSREAAQYKKALEEETNERNLAHQELIKQKKDISIQLSSAQSRCILLEKQLEYTKRMVLNVE
REKTMILEQQAQLQREKEQDQMKLHAKLEKLHVLEKECLRLTATRQTAEDKIKCLEEKLKEEEHQRRLFQ
DRACELQTGFEISKILMSTVSNSKHCKEKKKQPKKTNCLKREPPQQRDHKFRTPTFERKKPFRTTSQARA
NPQSSGEPVSICDSLSELLMTMEEELDQMNMEHRELLRQMMQPGNHSVSEDIEQELEQLAKKMESKGDQI
SKLKKHQDSVRKLQEKIENSRINESSGIHGNPKGSKNLKTSPRKCVSETSSFQRDRGFQPVQVHSLQSKL
RRDDIKWEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH