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Report for CCDS48481.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48481.1 Public Mus musculus 1 Kcnk2 23 108 98 CCDS HistoryNCBI Gene:16526Re-query CCDS DB by CCDS ID:48481.1Re-query CCDS DB by GeneID:16526See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48481.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110920.6 ENSMUSP00000106545.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110920.6Link to Ensembl Protein Viewer:ENSMUSP00000106545.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110920Re-query CCDS DB by Protein ID:ENSMUSP00000106545
Original member Current member EBI ENSMUST00000192723.1 ENSMUSP00000141849.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000192723.1Link to Ensembl Protein Viewer:ENSMUSP00000141849.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000192723Re-query CCDS DB by Protein ID:ENSMUSP00000141849
Original member NCBI NM_010607.3 NP_034737.2 Updated not alive Link to Nucleotide Sequence:NM_010607.3Link to Protein Sequence:NP_034737.2Re-query CCDS DB by Nucleotide ID:NM_010607Re-query CCDS DB by Protein ID:NP_034737
Current member NCBI NM_010607.4 NP_034737.2 Accepted alive Link to Nucleotide Sequence:NM_010607.4Link to Protein Sequence:NP_034737.2Re-query CCDS DB by Nucleotide ID:NM_010607Re-query CCDS DB by Protein ID:NP_034737Link to BLAST:NP_034737.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034737.2 411 P97438-2 411 100% 0 0

Chromosomal Locations for CCDS 48481.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 189209790 189210107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189242887 189243026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189256568 189256754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189258738 189258898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189295594 189295711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189339785 189340095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189343301 189343301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGGCGGCCCCTGACTTGCTGGATCCCAAGTCTGCTGCTCAGAACTCCAAACCGAGGCTCTCATTCTCCT
CAAAACCCACCGTGCTTGCTTCCCGGGTGGAGAGTGACTCGGCCATTAATGTTATGAAATGGAAGACAGT
CTCCACGATTTTCCTGGTGGTCGTCCTCTACCTGATCATCGGAGCCACGGTGTTCAAGGCATTGGAGCAG
CCTCAGGAGATTTCCCAGAGGACCACCATTGTGATCCAGAAGCAGACCTTCATAGCCCAGCATGCCTGCG
TCAACTCCACCGAGCTGGACGAACTCATCCAGCAAATAGTGGCAGCAATAAACGCAGGGATTATCCCCTT
AGGAAACAGCTCCAATCAAGTTAGTCACTGGGACCTCGGAAGCTCTTTCTTCTTTGCTGGTACTGTTATC
ACAACCATAGGATTTGGAAACATCTCCCCACGAACTGAAGGTGGAAAAATATTCTGCATCATCTATGCCT
TGCTGGGAATTCCCCTCTTTGGCTTTCTACTGGCTGGGGTTGGTGATCAGCTAGGAACTATATTTGGAAA
AGGAATTGCCAAAGTGGAAGACACATTTATTAAGTGGAATGTTAGTCAGACGAAGATTCGTATCATCTCC
ACCATCATCTTCATCCTGTTTGGCTGTGTCCTCTTTGTGGCTCTCCCTGCGGTCATATTCAAGCACATAG
AAGGCTGGAGCGCCCTGGACGCTATCTATTTTGTGGTTATCACTCTGACGACCATTGGATTTGGAGACTA
CGTGGCAGGTGGATCAGACATTGAATATCTGGACTTCTACAAGCCTGTGGTGTGGTTCTGGATCCTCGTT
GGGCTGGCCTACTTTGCAGCTGTTCTGAGCATGATTGGGGACTGGCTACGGGTGATCTCTAAGAAGACGA
AGGAAGAGGTGGGAGAGTTCAGAGCGCATGCCGCTGAGTGGACAGCCAATGTCACGGCCGAGTTCAAGGA
AACGAGGAGGCGGCTGAGCGTGGAGATCTACGACAAGTTCCAGCGTGCCACATCCGTGAAGCGGAAGCTC
TCCGCAGAGCTGGCGGGCAACCACAACCAGGAACTGACTCCGTGTAGGAGGACCCTGTCTGTGAACCACC
TGACCAGCGAGAGGGAAGTCCTGCCTCCCTTGCTGAAGGCTGAGAGCATCTATCTGAACGGTCTGACACC
ACACTGTGCTGGTGAGGACATAGCTGTCATTGAGAACATGAAGTAG

Translation (411 aa):
MAAPDLLDPKSAAQNSKPRLSFSSKPTVLASRVESDSAINVMKWKTVSTIFLVVVLYLIIGATVFKALEQ
PQEISQRTTIVIQKQTFIAQHACVNSTELDELIQQIVAAINAGIIPLGNSSNQVSHWDLGSSFFFAGTVI
TTIGFGNISPRTEGGKIFCIIYALLGIPLFGFLLAGVGDQLGTIFGKGIAKVEDTFIKWNVSQTKIRIIS
TIIFILFGCVLFVALPAVIFKHIEGWSALDAIYFVVITLTTIGFGDYVAGGSDIEYLDFYKPVVWFWILV
GLAYFAAVLSMIGDWLRVISKKTKEEVGEFRAHAAEWTANVTAEFKETRRRLSVEIYDKFQRATSVKRKL
SAELAGNHNQELTPCRRTLSVNHLTSEREVLPPLLKAESIYLNGLTPHCAGEDIAVIENMK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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