NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48480.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48480.1 Public Mus musculus 1 Kcnk2 23 108 98 CCDS HistoryNCBI Gene:16526Re-query CCDS DB by CCDS ID:48480.1Re-query CCDS DB by GeneID:16526See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48480.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000193319.5 ENSMUSP00000141891.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193319.5Link to Ensembl Protein Viewer:ENSMUSP00000141891.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193319Re-query CCDS DB by Protein ID:ENSMUSP00000141891
Original member NCBI NM_001159850.1 NP_001153322.1 Updated not alive Link to Nucleotide Sequence:NM_001159850.1Link to Protein Sequence:NP_001153322.1Re-query CCDS DB by Nucleotide ID:NM_001159850Re-query CCDS DB by Protein ID:NP_001153322
Current member NCBI NM_001159850.2 NP_001153322.1 Accepted alive Link to Nucleotide Sequence:NM_001159850.2Link to Protein Sequence:NP_001153322.1Re-query CCDS DB by Nucleotide ID:NM_001159850Re-query CCDS DB by Protein ID:NP_001153322Link to BLAST:NP_001153322.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153322.1 426 P97438-1 426 100% 0 0

Chromosomal Locations for CCDS 48480.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 189209790 189210107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189242887 189243026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189256568 189256754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189258738 189258898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189295594 189295711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189339785 189340095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189343043 189343088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGCTTGCCAGCGCCTCGCGGGAGAGACCCGGCTATACTGCAGGAGTGGCGGCCCCTGACTTGCTGGATC
CCAAGTCTGCTGCTCAGAACTCCAAACCGAGGCTCTCATTCTCCTCAAAACCCACCGTGCTTGCTTCCCG
GGTGGAGAGTGACTCGGCCATTAATGTTATGAAATGGAAGACAGTCTCCACGATTTTCCTGGTGGTCGTC
CTCTACCTGATCATCGGAGCCACGGTGTTCAAGGCATTGGAGCAGCCTCAGGAGATTTCCCAGAGGACCA
CCATTGTGATCCAGAAGCAGACCTTCATAGCCCAGCATGCCTGCGTCAACTCCACCGAGCTGGACGAACT
CATCCAGCAAATAGTGGCAGCAATAAACGCAGGGATTATCCCCTTAGGAAACAGCTCCAATCAAGTTAGT
CACTGGGACCTCGGAAGCTCTTTCTTCTTTGCTGGTACTGTTATCACAACCATAGGATTTGGAAACATCT
CCCCACGAACTGAAGGTGGAAAAATATTCTGCATCATCTATGCCTTGCTGGGAATTCCCCTCTTTGGCTT
TCTACTGGCTGGGGTTGGTGATCAGCTAGGAACTATATTTGGAAAAGGAATTGCCAAAGTGGAAGACACA
TTTATTAAGTGGAATGTTAGTCAGACGAAGATTCGTATCATCTCCACCATCATCTTCATCCTGTTTGGCT
GTGTCCTCTTTGTGGCTCTCCCTGCGGTCATATTCAAGCACATAGAAGGCTGGAGCGCCCTGGACGCTAT
CTATTTTGTGGTTATCACTCTGACGACCATTGGATTTGGAGACTACGTGGCAGGTGGATCAGACATTGAA
TATCTGGACTTCTACAAGCCTGTGGTGTGGTTCTGGATCCTCGTTGGGCTGGCCTACTTTGCAGCTGTTC
TGAGCATGATTGGGGACTGGCTACGGGTGATCTCTAAGAAGACGAAGGAAGAGGTGGGAGAGTTCAGAGC
GCATGCCGCTGAGTGGACAGCCAATGTCACGGCCGAGTTCAAGGAAACGAGGAGGCGGCTGAGCGTGGAG
ATCTACGACAAGTTCCAGCGTGCCACATCCGTGAAGCGGAAGCTCTCCGCAGAGCTGGCGGGCAACCACA
ACCAGGAACTGACTCCGTGTAGGAGGACCCTGTCTGTGAACCACCTGACCAGCGAGAGGGAAGTCCTGCC
TCCCTTGCTGAAGGCTGAGAGCATCTATCTGAACGGTCTGACACCACACTGTGCTGGTGAGGACATAGCT
GTCATTGAGAACATGAAGTAG

Translation (426 aa):
MLASASRERPGYTAGVAAPDLLDPKSAAQNSKPRLSFSSKPTVLASRVESDSAINVMKWKTVSTIFLVVV
LYLIIGATVFKALEQPQEISQRTTIVIQKQTFIAQHACVNSTELDELIQQIVAAINAGIIPLGNSSNQVS
HWDLGSSFFFAGTVITTIGFGNISPRTEGGKIFCIIYALLGIPLFGFLLAGVGDQLGTIFGKGIAKVEDT
FIKWNVSQTKIRIISTIIFILFGCVLFVALPAVIFKHIEGWSALDAIYFVVITLTTIGFGDYVAGGSDIE
YLDFYKPVVWFWILVGLAYFAAVLSMIGDWLRVISKKTKEEVGEFRAHAAEWTANVTAEFKETRRRLSVE
IYDKFQRATSVKRKLSAELAGNHNQELTPCRRTLSVNHLTSEREVLPPLLKAESIYLNGLTPHCAGEDIA
VIENMK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH