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Report for CCDS48436.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48436.1 Public Mus musculus 1 Ddr2 23 108 98 CCDS HistoryNCBI Gene:18214Re-query CCDS DB by CCDS ID:48436.1Re-query CCDS DB by GeneID:18214See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48436.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027985.7 ENSMUSP00000027985.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027985.7Link to Ensembl Protein Viewer:ENSMUSP00000027985.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000027985Re-query CCDS DB by Protein ID:ENSMUSP00000027985
Original member Current member EBI ENSMUST00000170800.7 ENSMUSP00000129624.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170800.7Link to Ensembl Protein Viewer:ENSMUSP00000129624.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170800Re-query CCDS DB by Protein ID:ENSMUSP00000129624
Original member Current member EBI ENSMUST00000194690.5 ENSMUSP00000141443.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000194690.5Link to Ensembl Protein Viewer:ENSMUSP00000141443.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000194690Re-query CCDS DB by Protein ID:ENSMUSP00000141443
Original member Current member NCBI NM_022563.2 NP_072075.2 Accepted alive Link to Nucleotide Sequence:NM_022563.2Link to Protein Sequence:NP_072075.2Re-query CCDS DB by Nucleotide ID:NM_022563Re-query CCDS DB by Protein ID:NP_072075Link to BLAST:NP_072075.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_072075.2 854 Q62371 854 100% 0 0

Chromosomal Locations for CCDS 48436.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 169977855 169977989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169981977 169982126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169984372 169984606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169984877 169985065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169987017 169987144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169988409 169988632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169990433 169990643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169994585 169994715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169995552 169995614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169997931 169998174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170001829 170002012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170004164 170004269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170004655 170004802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170005073 170005304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170006762 170006864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 170035913 170035994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2565 nt):
ATGATCCCGATTCCCAGAATGCCCCTGGTGCTGCTCCTGCTCTTGCTCATCCTGGGTTCTGCAAAAGCTC
AGGTTAATCCAGCCATATGCCGCTATCCTCTGGGCATGTCAGGAGGCCACATTCCAGATGAGGACATCAC
AGCCTCAAGTCAGTGGTCAGAATCCACGGCTGCCAAATATGGGAGGCTGGACTCTGAAGAAGGAGATGGA
GCCTGGTGTCCTGAGATTCCAGTGCAACCCGATGACCTGAAGGAATTTCTGCAGATTGACTTGCGAACCC
TACACTTTATCACTCTTGTGGGGACCCAGGGGCGCCATGCAGGGGGTCATGGCATTGAATTTGCACCCAT
GTACAAGATCAACTACAGTCGGGATGGCAGTCGCTGGATCTCCTGGCGTAACCGGCATGGGAAGCAGGTG
CTTGATGGAAACAGTAACCCTTATGATGTATTCCTGAAGGACTTGGAGCCACCCATCGTCGCCAGATTTG
TTCGCCTTATCCCAGTCACTGACCACTCCATGAACGTGTGCATGAGGGTTGAGCTTTATGGTTGTGTCTG
GCTAGATGGCTTGGTATCCTACAATGCTCCAGCTGGACAGCAGTTTGTACTCCCTGGAGGCTCCATCATT
TATCTGAATGATTCTGTCTATGATGGAGCTGTTGGGTACAGCATGACTGAAGGGCTAGGCCAGTTGACTG
ATGGAGTATCCGGCCTGGATGATTTTACCCAGACCCATGAATACCACGTGTGGCCTGGCTATGACTACGT
GGGATGGCGGAACGAAAGTGCTACCAACGGTTTCATTGAGATCATGTTTGAATTTGACCGAATCAGGAAT
TTTACTACCATGAAGGTCCACTGCAACAACATGTTTGCTAAAGGTGTGAAGATTTTTAAGGAGGTCCAGT
GCTACTTTCGCTCGGAAGCCAGCGAGTGGGAACCCACTGCTGTCTACTTTCCCCTGGTCCTGGACGATGT
GAACCCCAGTGCCCGGTTTGTCACGGTGCCCCTCCACCACCGAATGGCCAGTGCCATCAAGTGCCAATAC
CATTTTGCCGACACGTGGATGATGTTCAGCGAGATCACTTTCCAATCAGATGCTGCAATGTATAACAACT
CTGGAGCCCTTCCCACCTCTCCTATGGCACCCACCACCTATGATCCCATGCTTAAAGTTGATGATAGCAA
CACTCGGATCCTGATTGGTTGCTTGGTGGCCATCATCTTCATCCTGCTGGCTATCATCGTCATCATCCTG
TGGAGGCAGTTCTGGCAGAAGATGCTAGAAAAGGCTTCACGGAGGATGCTGGATGATGAAATGACAGTCA
GCCTTTCCCTGCCCAGCGAGTCCAGCATGTTCAATAACAACCGCTCCTCATCACCAAGTGAACAGGAGTC
CAACTCTACTTATGATCGAATCTTCCCCCTTCGCCCTGACTACCAGGAGCCATCCAGACTGATCCGAAAG
CTTCCAGAGTTTGCTCCAGGAGAGGAGGAGTCAGGGTGCAGTGGTGTTGTGAAGCCGGCCCAGCCCAATG
GACCTGAGGGCGTGCCCCACTATGCAGAAGCCGACATAGTGAATCTCCAGGGAGTGACAGGTGGCAACAC
CTACTGTGTGCCTGCTGTAACCATGGATCTGCTATCGGGGAAAGATGTGGCTGTGGAAGAGTTCCCCAGG
AAACTGTTGGCCTTCAAGGAGAAGCTGGGAGAAGGCCAGTTTGGGGAGGTTCATCTCTGTGAAGTGGAGG
GAATGGAAAAATTCAAAGACAAAGATTTTGCACTAGATGTCAGTGCCAACCAGCCTGTCCTGGTGGCCGT
GAAAATGCTCCGAGCAGATGCCAACAAGAATGCCAGGAATGATTTTCTTAAGGAGATCAAGATCATGTCT
CGGCTCAAGGACCCAAACATCATCCGTCTCTTAGCTGTGTGCATCACTGAGGACCCGCTCTGCATGATCA
CGGAATACATGGAGAATGGAGATCTTAATCAGTTTCTTTCTCGCCACGAGCCTCTGAGTTCCTGTTCTAG
TGATGCCACAGTCAGTTACGCCAACCTGAAGTTTATGGCAACCCAGATTGCCTCTGGTATGAAGTACCTT
TCGTCTCTCAACTTTGTCCACCGAGATCTGGCCACACGAAACTGTTTAGTGGGCAAGAATTACACCATCA
AGATAGCTGATTTTGGCATGAGCAGAAACCTGTACAGTGGTGATTACTACCGGATCCAGGGCCGGGCGGT
GCTCCCCATTCGCTGGATGTCCTGGGAAAGCATCTTGCTGGGCAAATTCACCACGGCAAGTGATGTGTGG
GCCTTTGGGGTGACTCTGTGGGAGACCTTCACCTTTTGCCAGGAGCAGCCCTATTCCCAGCTGTCGGATG
AGCAGGTTATCGAGAACACTGGAGAGTTCTTCCGAGACCAAGGGAGGCAGATCTATCTCCCTCAACCAGC
CCTTTGCCCCGACTCTGTGTATAAGCTGATGCTCAGCTGCTGGAGAAGAGAAACCAAGCACCGGCCATCC
TTCCAGGAAATACACCTCCTGCTTCTTCAGCAAGGAGCCGAGTGA

Translation (854 aa):
MIPIPRMPLVLLLLLLILGSAKAQVNPAICRYPLGMSGGHIPDEDITASSQWSESTAAKYGRLDSEEGDG
AWCPEIPVQPDDLKEFLQIDLRTLHFITLVGTQGRHAGGHGIEFAPMYKINYSRDGSRWISWRNRHGKQV
LDGNSNPYDVFLKDLEPPIVARFVRLIPVTDHSMNVCMRVELYGCVWLDGLVSYNAPAGQQFVLPGGSII
YLNDSVYDGAVGYSMTEGLGQLTDGVSGLDDFTQTHEYHVWPGYDYVGWRNESATNGFIEIMFEFDRIRN
FTTMKVHCNNMFAKGVKIFKEVQCYFRSEASEWEPTAVYFPLVLDDVNPSARFVTVPLHHRMASAIKCQY
HFADTWMMFSEITFQSDAAMYNNSGALPTSPMAPTTYDPMLKVDDSNTRILIGCLVAIIFILLAIIVIIL
WRQFWQKMLEKASRRMLDDEMTVSLSLPSESSMFNNNRSSSPSEQESNSTYDRIFPLRPDYQEPSRLIRK
LPEFAPGEEESGCSGVVKPAQPNGPEGVPHYAEADIVNLQGVTGGNTYCVPAVTMDLLSGKDVAVEEFPR
KLLAFKEKLGEGQFGEVHLCEVEGMEKFKDKDFALDVSANQPVLVAVKMLRADANKNARNDFLKEIKIMS
RLKDPNIIRLLAVCITEDPLCMITEYMENGDLNQFLSRHEPLSSCSSDATVSYANLKFMATQIASGMKYL
SSLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILLGKFTTASDVW
AFGVTLWETFTFCQEQPYSQLSDEQVIENTGEFFRDQGRQIYLPQPALCPDSVYKLMLSCWRRETKHRPS
FQEIHLLLLQQGAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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