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Report for CCDS48402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48402.1 Public Mus musculus 1 Tor1aip1 23 108 98 CCDS HistoryNCBI Gene:208263Re-query CCDS DB by CCDS ID:48402.1Re-query CCDS DB by GeneID:208263See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48402.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097527.9 ENSMUSP00000095134.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097527.9Link to Ensembl Protein Viewer:ENSMUSP00000095134.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097527Re-query CCDS DB by Protein ID:ENSMUSP00000095134
Original member NCBI NM_001160018.1 NP_001153490.1 Updated not alive Link to Nucleotide Sequence:NM_001160018.1Link to Protein Sequence:NP_001153490.1Re-query CCDS DB by Nucleotide ID:NM_001160018Re-query CCDS DB by Protein ID:NP_001153490
Current member NCBI NM_001160018.2 NP_001153490.1 Accepted alive Link to Nucleotide Sequence:NM_001160018.2Link to Protein Sequence:NP_001153490.1Re-query CCDS DB by Nucleotide ID:NM_001160018Re-query CCDS DB by Protein ID:NP_001153490Link to BLAST:NP_001153490.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153490.1 576 Q921T2-2 576 100% 0 0

Chromosomal Locations for CCDS 48402.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156006925 156007709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156013318 156013374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156017511 156017579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156018218 156018259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156022300 156022380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156023149 156023187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156030387 156030431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156031414 156031473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156033726 156033800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156035758 156036235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1731 nt):
ATGGCGGGAGAAAGGTGGCAGGCCGAGGGGCCCGGAGAAGGTTGGGCCATCTACGTCACACCCAGAGCCC
CCATCCGGGAGGGAAGGCGGAGGCTCGACCCGCGAAATGGCGACAGCAGTGACGCGCCTGCGTACGGAGC
TCACCCGTCGCGCCGCGGACGACGGGAAGTGAGGTTTTCAGAGGAGCCGGCAGAAGTGTACGGCGACTTC
GAGCCCCGGGCGGCCAAAGAAAGGTCTCCGGGGGGGAGACGAACCCCGCCAGAAAAGTTCCGGCCGGCTT
CTGCGGGAGAGGAAGTGAGAGAAAGCGCTTACAACCTTCGCTCTCGACCACGGAGGCAGCGGCGAGCCCA
GGAAGCCGAGGAGATGAAGACGCGGAGGTCTGCTCGCCTTGAGCAGCACTCACAGCAGCCGCAGCTGTCT
CCGGCCACGAGCGGCCGAGGGTTACGGGACTCTCCGTCCTCCAGTGAGGACCGCGAAGAGGATGAACCTT
CTTCCCGACCTGTTACAAGCCAAACAGCCTCAAAGAAAACTCTTAGAACACCAGAGGCTTCAGTGATGAA
TGAAGACCCTATAAGCAACTTATGCAGACCCCCATTAAGAAGCCCAAGACTTGATTCAACATACCAAACA
AATGGAAATACTAAAACGAATGAAAGAGAAGCTACCATTGTCCAGCAGGTCAATTTCTTCGAAGAAGGAG
AAACCGAAGATGATCTCGAGAGCTCTTACAGTGACATCACTATCAGGGCCAGATCCAGCGATTCTCTTGA
GTCAAGAGATCAGGACTTCCCAGCTCATGAGAATCAGCCATTACTGCTGACCTCAGGATGTCAGGAAAAC
CCTCAGGAGTGGGTTGACCGAGCTGTACGAATGAGGAGTAGAATGGCGTATAACAACATTCAGAAATCCA
ACTTTGGAAACCAGTCTCCATCAACCTCCAGGCCACAATCGGCTATCCATCACCCAAATGAACCTTCTGT
CAAGATAAAGTGGTGGCTGCTGGGACTTGTTGCCATCCTTGCAGTGGGACTATTTTGGTTCTTTCATACC
CCTGCAGTGGAAACCACTGCCGTTCAAGAATTCCAGAACCAGATGAAGCAACTCCAGTCTAAGTACCAGA
GTCAAAACGAGAAGCTGTGGAAGAGAGGCACCACCTTCCTAGAAAAACATCTGAATAGCTCCCTCCCTCG
GCCCCAGCCTGCCATCCTGTTGCTCACTGCAGCTCAAGATGCTGCAGAAGTGCTCAAGTGTCTGAGTGAA
CAAATTGCCGACGCCTACTCCTCCTTCCGTAGTGTCCGTGCCATCCGGATTGACGGGGCAGGTAAAGCTG
CTCAGGACAGTGACCTCGTTAAGCATGAAGTCGATCAGGAGCTGACTGATGGATTTAAAAATGGCCAGAA
TGCAGCTGTGGTACACCGCTTCGAATCCCTGCCTGCTGGCTCAACCTTGATCTTCTATAAATACTGTGAC
CATGAAAATGCAGCCTTCAAAGATGTAGCCCTCGTCCTGACTGTACTGTTGGAGGAGAAGACGCTGGAAG
CCAGTTTAGGCCTAAAGGAAATTGAAGAGAAAGTGAGGGATTTCCTTAAAGTCAAGTTCACCAGCTCTAG
CACTGCCAGCTCCTACAACCACATGGACCCAGACAAGCTGAATGGGCTCTGGAGCCGCATCTCCCACCTC
GTGCTGCCTGTGCAGCCTGAGAACACTCTGAAAGCAGGCAGCTGCTTATGA

Translation (576 aa):
MAGERWQAEGPGEGWAIYVTPRAPIREGRRRLDPRNGDSSDAPAYGAHPSRRGRREVRFSEEPAEVYGDF
EPRAAKERSPGGRRTPPEKFRPASAGEEVRESAYNLRSRPRRQRRAQEAEEMKTRRSARLEQHSQQPQLS
PATSGRGLRDSPSSSEDREEDEPSSRPVTSQTASKKTLRTPEASVMNEDPISNLCRPPLRSPRLDSTYQT
NGNTKTNEREATIVQQVNFFEEGETEDDLESSYSDITIRARSSDSLESRDQDFPAHENQPLLLTSGCQEN
PQEWVDRAVRMRSRMAYNNIQKSNFGNQSPSTSRPQSAIHHPNEPSVKIKWWLLGLVAILAVGLFWFFHT
PAVETTAVQEFQNQMKQLQSKYQSQNEKLWKRGTTFLEKHLNSSLPRPQPAILLLTAAQDAAEVLKCLSE
QIADAYSSFRSVRAIRIDGAGKAAQDSDLVKHEVDQELTDGFKNGQNAAVVHRFESLPAGSTLIFYKYCD
HENAAFKDVALVLTVLLEEKTLEASLGLKEIEEKVRDFLKVKFTSSSTASSYNHMDPDKLNGLWSRISHL
VLPVQPENTLKAGSCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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