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Report for CCDS48401.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48401.1 Public Mus musculus 1 Tor1aip1 23 108 98 CCDS HistoryNCBI Gene:208263Re-query CCDS DB by CCDS ID:48401.1Re-query CCDS DB by GeneID:208263See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48401.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169241.7 ENSMUSP00000126751.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169241.7Link to Ensembl Protein Viewer:ENSMUSP00000126751.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169241Re-query CCDS DB by Protein ID:ENSMUSP00000126751
Original member NCBI NM_001160019.1 NP_001153491.1 Updated not alive Link to Nucleotide Sequence:NM_001160019.1Link to Protein Sequence:NP_001153491.1Re-query CCDS DB by Nucleotide ID:NM_001160019Re-query CCDS DB by Protein ID:NP_001153491
Current member NCBI NM_001160019.2 NP_001153491.1 Accepted alive Link to Nucleotide Sequence:NM_001160019.2Link to Protein Sequence:NP_001153491.1Re-query CCDS DB by Nucleotide ID:NM_001160019Re-query CCDS DB by Protein ID:NP_001153491Link to BLAST:NP_001153491.1

Chromosomal Locations for CCDS 48401.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156006925 156007709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156013318 156013374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156017511 156017579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156018218 156018259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156022300 156022380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156023149 156023187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156030387 156030431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156031414 156031471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGAATGAAGACCCTATAAGCAACTTATGCAGACCCCCATTAAGAAGCCCAAGACTTGATTCAACATACC
AAACAAATGGAAATACTAAAACGAATGAAAGAGAAGCTACCATTGTCCAGCAGGTCAATTTCTTCGAAGA
AGGAGAAACCGAAGATGATCTCGAGAGCTCTTACAGTGACATCACTATCAGGGCCAGATCCAGCGATTCT
CTTGAGTCAAGAGATCAGGACTTCCCAGCTCATGAGAATCAGCCATTACTGCTGACCTCAGGATGTCAGG
AAAACCCTCAGGAGTGGGTTGACCGAGCTGTACGAATGAGGAGTAGAATGGCGTATAACAACATTCAGAA
ATCCAACTTTGGAAACCAGTCTCCATCAACCTCCAGGCCACAATCGGCTATCCATCACCCAAATGAACCT
TCTGTCAAGATAAAGTGGTGGCTGCTGGGACTTGTTGCCATCCTTGCAGTGGGACTATTTTGGTTCTTTC
ATACCCCTGCAGTGGAAACCACTGCCGTTCAAGAATTCCAGAACCAGATGAAGCAACTCCAGTCTAAGTA
CCAGAGTCAAAACGAGAAGCTGTGGAAGAGAGGCACCACCTTCCTAGAAAAACATCTGAATAGCTCCCTC
CCTCGGCCCCAGCCTGCCATCCTGTTGCTCACTGCAGCTCAAGATGCTGCAGAAGTGCTCAAGTGTCTGA
GTGAACAAATTGCCGACGCCTACTCCTCCTTCCGTAGTGTCCGTGCCATCCGGATTGACGGGGCAGGTAA
AGCTGCTCAGGACAGTGACCTCGTTAAGCATGAAGTCGATCAGGAGCTGACTGATGGATTTAAAAATGGC
CAGAATGCAGCTGTGGTACACCGCTTCGAATCCCTGCCTGCTGGCTCAACCTTGATCTTCTATAAATACT
GTGACCATGAAAATGCAGCCTTCAAAGATGTAGCCCTCGTCCTGACTGTACTGTTGGAGGAGAAGACGCT
GGAAGCCAGTTTAGGCCTAAAGGAAATTGAAGAGAAAGTGAGGGATTTCCTTAAAGTCAAGTTCACCAGC
TCTAGCACTGCCAGCTCCTACAACCACATGGACCCAGACAAGCTGAATGGGCTCTGGAGCCGCATCTCCC
ACCTCGTGCTGCCTGTGCAGCCTGAGAACACTCTGAAAGCAGGCAGCTGCTTATGA

Translation (391 aa):
MNEDPISNLCRPPLRSPRLDSTYQTNGNTKTNEREATIVQQVNFFEEGETEDDLESSYSDITIRARSSDS
LESRDQDFPAHENQPLLLTSGCQENPQEWVDRAVRMRSRMAYNNIQKSNFGNQSPSTSRPQSAIHHPNEP
SVKIKWWLLGLVAILAVGLFWFFHTPAVETTAVQEFQNQMKQLQSKYQSQNEKLWKRGTTFLEKHLNSSL
PRPQPAILLLTAAQDAAEVLKCLSEQIADAYSSFRSVRAIRIDGAGKAAQDSDLVKHEVDQELTDGFKNG
QNAAVVHRFESLPAGSTLIFYKYCDHENAAFKDVALVLTVLLEEKTLEASLGLKEIEEKVRDFLKVKFTS
SSTASSYNHMDPDKLNGLWSRISHLVLPVQPENTLKAGSCL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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