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Report for CCDS48395.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48395.1 Public Mus musculus 1 Smg7 23 108 98 CCDS HistoryNCBI Gene:226517Re-query CCDS DB by CCDS ID:48395.1Re-query CCDS DB by GeneID:226517See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48395.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111836.3 ENSMUSP00000107467.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111836.3Link to Ensembl Protein Viewer:ENSMUSP00000107467.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111836Re-query CCDS DB by Protein ID:ENSMUSP00000107467
Original member Current member NCBI NM_001160256.1 NP_001153728.1 Accepted alive Link to Nucleotide Sequence:NM_001160256.1Link to Protein Sequence:NP_001153728.1Re-query CCDS DB by Nucleotide ID:NM_001160256Re-query CCDS DB by Protein ID:NP_001153728Link to BLAST:NP_001153728.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153728.1 1138 Q5RJH6-1 1138 100% 0 0

Chromosomal Locations for CCDS 48395.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 152839272 152839385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152840035 152840180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152840302 152840472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152841025 152841184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152841513 152841593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152843230 152843379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152844036 152844407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152845213 152845595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152846119 152846263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152848734 152849016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152849875 152849994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152852598 152852658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152854310 152854380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152855849 152856002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152856449 152856611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152858879 152859014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152859352 152859502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152860450 152860521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152861681 152861852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152866581 152866713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152868252 152868369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152870760 152870791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 152902509 152902537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3417 nt):
ATGAGCCTGCAGAGCGCGCAGTATCTCCGGCAGGCAGAAGTCCTGAAGGCTGAAATGACAGATTCTAAGC
TGGGTCCGGCTGAGGTCTGGACATCCAGGCAAGCTCTGCAGGACTTGTACCAGAAAATGCTAGTTACTGA
TCTGGAATACGCTTTAGACAAGAAAGTAGAACAGGATCTCTGGAATCATGCCTTTAAGAATCAGATCACA
ACACTGCAAGGCCAAGCCAAGAATCGAGCAAACCCAAATCGAAGTGAAGTCCAGGCAAACCTTTCTCTGT
TCCTAGAGGCAGCTAGCGGCTTCTATACTCAGTTATTACAGGAACTGTGTACGGTGTTTAATGTAGATTT
GCCATGCCGTGTGAAGTCTTCCCAGTTGGGAATTATTAGCAATAAACAGACGCACAGCAGCACCATAGTG
AAGCCACAGTCTAGCTCCTGCTCCTACATTTGCCAACACTGCCTCGTCCACCTTGGAGACATTGCTCGAT
ACAGAAATCAGACTAGCCAGGCAGAGTCCTACTATAGGCATGCAGCTCAGCTTGTCCCCTCCAATGGTCA
GCCTTACAATCAGTTGGCTATCTTAGCTTCTTCCAAAGGAGACCACCTGACCACAATTTTCTACTACTGC
AGAAGCATTGCTGTGAAATTCCCTTTCCCAGCTGCCTCCACTAATCTACAAAAAGCACTTTCTAAAGCAC
TGGAAAGCCGGGATGAGTTGAAAACCAAGTGGGGTGTTTCTGACTTCATCAAGGCCTTTATTAAATTCCA
CGGTCATGTATACCTGAGTAAGAGTTTGGAAAAGCTGAGCCCTCTTCGAGAGAAGTTGGAAGAACAGTTT
AAGAGACTGCTGTTCCAAAAGGCTTTCAACTCTCAACAGTTAGTTCATGTCACTGTCATTAACCTGTTTC
AACTTCATCATCTTCGTGACTTTAGCAATGAAACAGAGCAACACAGTTACAGCCAAGATGAACAGCTGTG
TTGGACACAGTTGCTGGCCCTCTTTATGTCTTTTCTCGGCATCCTGTGCAAATGTCCTCTCCAGAATGAT
TCTCAGGAGTCCAACAATGCCTACCCCCTTCCTGCAGTCAAGGTCTCCATGGACTGGCTAAGACTCCGAC
CTAGAGTCTTTCAAGAAGCAGTGGTGGATGAAAGACAGTACATTTGGCCCTGGCTAATTTCTCTTCTAAA
TAGTTTCCATCCCCGTGAAGATGATCTCTCAAATACTAATGCCACACCACTTCCAGAGGAGTTTGAATTA
CAAGGATTCTTGGCTTTAAGACCTTCTTTCAGGAACTTGGATTTTTCCAAAGGCCATCAGGGTATTACAG
GAGACAAAGAGGGTCAACAACGACGAATACGACAGCAGCGTTTGATCTCCATAGGGAAATGGATTGCTGA
TAACCAGCCACGGCTGATTCAGTGTGAAAATGAGGTAGGGAAATTGTTATTTATCACAGAAATCCCAGAA
TTAATACTAGAAGACCCCAGTGAAGCCAAAGAGAACCTCATCCTACAAGAAACATCTGTGGTAGAGTCAC
TGGCTACGGATGGGAGCCCAGGACTGAAATCAGTGCTGTCTACAGGCCGAAATCCAAGCAACAGCTGTGA
CTCAGGAGAGAAACCAGTGGTCACCTTTAAAGAGAACATTAAGCCACGAGAAGTGAACCAAGGAAGAAGC
TTTCCTCCCAAAGAGGTAAAATCCCAGACAGAACTAAGAAAGACTCCAGTGTCTGAAGCCAGGAAAACGC
CTGTCACTCAAACTCCAAGTCAAACGAGTAATTCTCAGTTCATCCCCATCCATCACCCTGGAGCCTTCCC
TCCTCTTCCCAGCCGACCAGGATTCCCGCCCCCAACATATGTTATCCCCCCTCCTGTGGCATTTTCTATG
GGCTCAGGTTACACCTTCCCAGCTGGTGTTTCTGTCCCAGGAACCTTTCTTCAGTCTACAGCTCACTCTC
CAGCAGGAAACCAGGTGCAAGCTGGGAAACAGTCCCACATTCCTTACAGCCAGCAACGGCCCTCTGGACC
AGGGCCAATGAACCAGGGACCTCAACAGTCACAGCCACCTTCCCAGCCACCCCTTACATCTTTACCAGCT
CAGCCAACAGCACAGTCTACAAGCCAATTGCAGGTTCAAGCTCTAGCTCAGCAACAGCAATCCCCTACAA
AAGTCATACCAGCTTTGGGGAAAAGCCCGCCTCACCACTCTGGATTCCAGCAGTATCAACAGGCAGATGC
CTCCAAACAGCTGTGGAATCCCCCTCAGGTTCAAAGCCCACTAGGGAAAATTATGCCTGTGAAACAGTCC
TACTACCTTCAGACCCAAGACCCTATAAAACTGTTTGAGCCGTCATTGCAACCTCCTGTAATACAGCAGC
AGCCTCTAGAGAAAAAAATGAAGCCTTTCCCCATGGAGCCATATAACCATAATCCCTCAGAAGTCAAGGT
CCCAGAGTTCTACTGGGATTCTTCCTACAGCATGGCCGATAACAGAGCAGTAATGGCTCAGCAACCAAAT
ATGGACCGCAGGAGCAAACGGTCACCTGGAGTCTTCCGTCCAGAACAGGATCCTGTGCCCAGGATGCCAT
TTGAGGACCCCAAGAGCTCCCCTCTGCTTCCTCCGGACCTGTTAAAGAGTCTGGCTGCCTTGGAGGAAGA
GGAAGAGCTGATCTTTTCTAACCCTCCTGATCTTTACCCAGCTCTGCTGGGTCCTCTCGCCTCTCTTCCT
GGACGAAGCCTCTTTAAATCCTTATTGGAGAAGCCTTCTGAGCTCATGTCACATTCATCTTCTTTCCTGT
CCCTCACGGGGTTCTCTGTCAATCAGGAAAGATATCCAAACAGCAGTATGTTCAATGAAGTGTATGGAAA
AAACCTGACAACCAGCTCCAAGGCAGAACTGAACCCCTCAGTCGCCTCCCAGGAAACATCACTGTACTCC
CTTTTTGAAGGGACCCCATGGTCTCCATCACTTCCTGCCAGTTCAGATCATTCGACACCAGCCAGCCAGT
CTCCTCATTCCTCTAACCCAAGCAGCCTGCCCAGTTCTCCTCCAACGCATAACCATAATTCTGCTCCATT
CTCTAATTTTGGACCCATTGGGACTCCAGATAACAGGGATAGGCGGCCTGCAGATAGGTGGAAAACTGAT
AAACCAGCCATGGGTGGTTTTGGTGTTGATTATCTCTCAGCAACGTCATCATCTGAGAGCAGTTGGCATC
AGGCTAGCACTCCGAGTGGCACCTGGACAGGCCACGGCCCCTCCATGGAGGATTCCTCTGCTGTCCTCAT
GGAAAGCCTAAAGTCTATCTGGTCCAGTTCCATGATGCATCCTGGGCCCTCCGCTCTGGAGCAGTTGTTA
ATGCAGCAGAAGCAGAAACAGCAGCGGGGACAAGGTGCCATGAACCCTCCACACTGA

Translation (1138 aa):
MSLQSAQYLRQAEVLKAEMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQIT
TLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHSSTIV
KPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC
RSIAVKFPFPAASTNLQKALSKALESRDELKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQF
KRLLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHSYSQDEQLCWTQLLALFMSFLGILCKCPLQND
SQESNNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQYIWPWLISLLNSFHPREDDLSNTNATPLPEEFEL
QGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADNQPRLIQCENEVGKLLFITEIPE
LILEDPSEAKENLILQETSVVESLATDGSPGLKSVLSTGRNPSNSCDSGEKPVVTFKENIKPREVNQGRS
FPPKEVKSQTELRKTPVSEARKTPVTQTPSQTSNSQFIPIHHPGAFPPLPSRPGFPPPTYVIPPPVAFSM
GSGYTFPAGVSVPGTFLQSTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQQSQPPSQPPLTSLPA
QPTAQSTSQLQVQALAQQQQSPTKVIPALGKSPPHHSGFQQYQQADASKQLWNPPQVQSPLGKIMPVKQS
YYLQTQDPIKLFEPSLQPPVIQQQPLEKKMKPFPMEPYNHNPSEVKVPEFYWDSSYSMADNRAVMAQQPN
MDRRSKRSPGVFRPEQDPVPRMPFEDPKSSPLLPPDLLKSLAALEEEEELIFSNPPDLYPALLGPLASLP
GRSLFKSLLEKPSELMSHSSSFLSLTGFSVNQERYPNSSMFNEVYGKNLTTSSKAELNPSVASQETSLYS
LFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHNSAPFSNFGPIGTPDNRDRRPADRWKTD
KPAMGGFGVDYLSATSSSESSWHQASTPSGTWTGHGPSMEDSSAVLMESLKSIWSSSMMHPGPSALEQLL
MQQKQKQQRGQGAMNPPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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