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Report for CCDS48339.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48339.1 Public Mus musculus 1 Epb41l5 23 108 98 CCDS HistoryNCBI Gene:226352Re-query CCDS DB by CCDS ID:48339.1Re-query CCDS DB by GeneID:226352See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48339.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027632.13 ENSMUSP00000027632.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027632.13Link to Ensembl Protein Viewer:ENSMUSP00000027632.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027632Re-query CCDS DB by Protein ID:ENSMUSP00000027632
Original member Current member EBI ENSMUST00000191046.6 ENSMUSP00000140227.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191046.6Link to Ensembl Protein Viewer:ENSMUSP00000140227.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191046Re-query CCDS DB by Protein ID:ENSMUSP00000140227
Original member Current member NCBI NM_001113416.1 NP_001106887.1 Accepted alive Link to Nucleotide Sequence:NM_001113416.1Link to Protein Sequence:NP_001106887.1Re-query CCDS DB by Nucleotide ID:NM_001113416Re-query CCDS DB by Protein ID:NP_001106887Link to BLAST:NP_001106887.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106887.1 504 Q8BGS1-2 504 100% 0 0

Chromosomal Locations for CCDS 48339.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 119595879 119596059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119599005 119599120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119600198 119600237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119605228 119605255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119607987 119608093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119609117 119609286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119615346 119615415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119616401 119616489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119617364 119617451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119617554 119617674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119620167 119620219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119620675 119620719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119621886 119621964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119623926 119623968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119633545 119633649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 119642477 119642656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGCTGAGCTTCCTGAGACGAACGCTTGGCCGCAGGTCTATGCGCAAGCATGCTGAAAAGGAGCGGCTCC
GAGAGGCACAGCGTGCGGCCACACACATTCCTGCCGCTGGGGATGCCAAGTCCATCATCACATGCAGGGT
GTCCCTTCTGGACGGTACAGATGTCAGTGTGGACTTGCCGAAAAAAGCCAAAGGACAGGAGCTGTTTGAC
CAAATCATGTATCACCTGGACTTGATTGAAAGTGACTATTTTGGTTTGAGATTCATGGATTCAGCCCAAG
TAGCCCATTGGTTGGATGGTACAAAAAGCATCAAAAAGCAAGTAAAAATTGGTTCACCCTATTGTCTTCA
TCTTCGAGTTAAGTTTTATTCCTCGGAACCAAATAATCTTCGTGAGGAGCTAACCCGGTATTTATTTGTT
CTTCAGCTAAAACAAGATATTCTCAGTGGGAAGTTAGAGTGTCCCTTTGATACAGCAGTTCAGTTGGCAG
CTTATAATCTGCAAGCTGAACTTGGCGACTATGATCTTGCTGAACATAGTCCTGAACTGGTCTCTGAGTT
CAGGTTTGTGCCCATCCAGACTGAAGAGATGGAACTGGCTATTTTTGAGAAATGGAAGGAATACAGAGGT
CAGACACCAGCACAAGCAGAAACCAATTACCTGAATAAAGCCAAATGGCTAGAAATGTATGGTGTTGATA
TGCACGTGGTCAAGGCTAGAGATGGCAATGACTATAGTTTGGGACTGACTCCAACAGGAGTCCTTGTTTT
TGAAGGAGAGACCAAAATTGGCTTGTTTTTCTGGCCCAAGATAACCAGATTGGATTTTAAGAAGAATAAG
TTAACTCTAGTGGTTGTGGAAGATGATGATCAGGGCAAAGAACAAGAGCATACCTTTGTCTTTAGATTGG
ATCACCCTAAAGCCTGCAAACACTTATGGAAATGTGCTGTGGAGCACCATGCCTTCTTCCGCCTCCGAGG
ACCTGTCCAAAAGAGTTCCCATCGATCAGGATTCATTCGACTAGGATCCCGATTTAGATACAGTGGAAAA
ACAGAATATCAGACCACAAAAACTAATAAAGCAAGAAGATCAACCTCCTTTGAAAGAAGGCCTAGCAAGC
GGTATTCCCGACGGACGCTGCAAATGAAAGCCAGCACAACACAACCTGAAGATCTTGGTGTTCTTAATGC
TTCCGCTCAGAAAAGTGACTCCCAACAGGCTTGGGGTGTGATGTCTCCTGTGCCTGTCACTTCTTCCTCA
TCCTGTGGCGCTGTGCAGGTGGAGATAGAGAATCTCCCACAGACCTCTGCGACAGAGCAGCACGACAGGA
AATGGCTCTCTGCTACCAGTGACCGCTGCCAACGTGGTGGAAACCAGTGGAACCCAAGGGCCTTGCCCCC
ACCCCAGACTGCATATAGAAACTACACTGACTTTGTACATGAGCATAATGTGAAGAATGCAGGAGCCCAT
CATGACGCTCAGTTATCTGGCCGTGCAGCCATGACCGAGATATGA

Translation (504 aa):
MLSFLRRTLGRRSMRKHAEKERLREAQRAATHIPAAGDAKSIITCRVSLLDGTDVSVDLPKKAKGQELFD
QIMYHLDLIESDYFGLRFMDSAQVAHWLDGTKSIKKQVKIGSPYCLHLRVKFYSSEPNNLREELTRYLFV
LQLKQDILSGKLECPFDTAVQLAAYNLQAELGDYDLAEHSPELVSEFRFVPIQTEEMELAIFEKWKEYRG
QTPAQAETNYLNKAKWLEMYGVDMHVVKARDGNDYSLGLTPTGVLVFEGETKIGLFFWPKITRLDFKKNK
LTLVVVEDDDQGKEQEHTFVFRLDHPKACKHLWKCAVEHHAFFRLRGPVQKSSHRSGFIRLGSRFRYSGK
TEYQTTKTNKARRSTSFERRPSKRYSRRTLQMKASTTQPEDLGVLNASAQKSDSQQAWGVMSPVPVTSSS
SCGAVQVEIENLPQTSATEQHDRKWLSATSDRCQRGGNQWNPRALPPPQTAYRNYTDFVHEHNVKNAGAH
HDAQLSGRAAMTEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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