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Report for CCDS48336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48336.1 Public Mus musculus 1 Zcchc2 23 108 98 CCDS HistoryNCBI Gene:227449Re-query CCDS DB by CCDS ID:48336.1Re-query CCDS DB by GeneID:227449See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48336.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119166.7 ENSMUSP00000113128.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119166.7Link to Ensembl Protein Viewer:ENSMUSP00000113128.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119166Re-query CCDS DB by Protein ID:ENSMUSP00000113128
Original member Current member NCBI NM_001122675.1 NP_001116147.1 Accepted alive Link to Nucleotide Sequence:NM_001122675.1Link to Protein Sequence:NP_001116147.1Re-query CCDS DB by Nucleotide ID:NM_001122675Re-query CCDS DB by Protein ID:NP_001116147Link to BLAST:NP_001116147.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116147.1 1155 Q69ZB8-2 1155 100% 0 0

Chromosomal Locations for CCDS 48336.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 105990790 105991707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106000931 106001042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106004100 106004176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106006015 106006086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106011702 106011814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106015999 106016093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106018219 106018302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106019848 106019905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106021726 106021858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106023200 106023264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106023664 106023758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106027403 106027531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106029752 106031268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3468 nt):
ATGCTGAGGATGAAGCTGCCACCGAAGTCGACGCACCCCAGCGAGCCGCCGCCCGACGCGGAGGAGCCCG
AGGCGGACGCGCGGCCGGGCGCAAAGGCTCCGCTGCGCCGCCGCCGCGACTGCCGCCCGCCGCCGCCGCC
CACGGGCCTGCCGCGGGGACCCCCGCCGCCGCCGTCGCCGCCCCGGGGGCTCGAGCCGCCTGTTGCTAGC
GGGCCGACGGCGGGCGCGGGCATGCCGGGCGGCGGCGGGCACGCGGCGGCGCTGCGCGAACAGGAGCGGG
TGTATGAGTGGTTCGGGCTGGTGCTGGGCTCGGCGCAGCGCCTTGAGTTCATGTGCGGGCTGCTGGACCT
GTGCAACCCGCTGGAGCTGCGCTTTCTCGGCTCGTGCCTGGAGGACTTGGCGCGCAAGGACTACCACTAC
CTGCGCGACTCGGAGGCGAAGGCCAACGGCCTCTCGGACCCAGGGTCGCTGGCCGATTTCCGAGAGCCCG
CCGTGCGCTCGCGCCTCATCGTATACCTAGCGCTGCTGGGCTCGGAGAACAGAGAGGCCGCTGGCCGCCT
GCACCGCCTCCTGCCCCAGGTGGACGCGGTGCTCAGAAGCCTGCGCGCGACTCGAGCCGAGGGCTCGCGG
GGCAGCGTGGAGGACGAGCCGAGTGGCGATGGCGAGCAGGACGCGGAGAAGGACGGCCCCGGCCCGGAAG
GCAGTGGCTGCGCCAAGCTCGGGACTGGAGGCGGGCTCGGCTTCAGGGCCCAAGAGGAACTGCTGCTGCT
GTTCACCATGGCTTCGCTGCACCCGGCTTTCTCCTTCCACCAGCGGGTCACCCTGAGGGAGCACCTGGAG
AGGCTCCGCAGCGCACTCCGGGTGGAGCCGGAGGACGCGGAGGTGGAGCCCAGCAACTTTGCGGGCTCCA
GGGCCCAGAACGACTCTGCCTGTGGTGACTATATACAGAGTAATGAGACTGGTTTAGTAGAGCAAGCCCA
GATACCTCCAGACGGACTCACTGTGGCCCCTCATCGAGCTCAGCGAGAAGCTGTCCACATTGAGAAGATA
ATGTTGAAAGGAGTCCAGAGAAAAAGGGCTGACAAGTACTGGGAGTACACTTTCAAAGTAAATTGGTCTG
ACCTTTCAGTCACAACAGTAACAAAAACCCACCAAGAACTACAGGAATTTCTACTGAAGCTTCCAAAGGA
ATTCTCTTCTGAGAGTTTTGACAAGACCATCTTAAAAGCCCTGAATCAGGGTTCTCTAAGGAGGGAAGAG
CGGCGCCACCCTGACCTGGAGCCCATCCTAAGGCAGCTGTTTTCAACCTCACCCCAGGCTTTCCTTCAGA
GTCACAAAGTCCGCAGCTTTTTTCGGTCGATCTCATCGGAGTCTCAACACAATTTCAATAACTTACAGTC
CTCTCTGAAGACTTCTAAGATATTAGAACACTTAAAAGAAGACAGCTCAGAAGCTTCAAGTCAAGAAGAA
GATGTGTTACAGCACACCATCATCCACAAGAAACATGCTGGGAAAAGTCCCGCTCTGAATGTTGCTACAA
GCTGTTCTCCATTGGATGGCCTTACCATGCAGTATGCAGAACAAAATGGAATTGTGGATTGGAGGAACCA
AGGCTGTGCGGCCATCCAACACTCAGAACACTGTGTGTCCTCAGCTGACCAACACTCTGCTGAAAAACGG
AGCTTATCTTCAGGAAATAAGAAGAAAGGGAAGCCACAAGTAGAAAAGGAGAAAGTAAAGAAAACTGAGG
ACAGATTGAACAGCAGAATAAATGGAATTAGACTCTCTGCTCCACAGCATGTTCATGGCAGTACTGTGAA
AGATATGAATTTGGACATTGGATCTGGACATGACACATGTGGAGAAACATCTTCAGAGAGTTACAGCTCT
CCGTCTAGTCCACGGCATGATGGAAGAGAGAGTTTGGAAAGTGAAGAAGAGAAGGACAGAGATTCAGACA
GCAATTCTGAAGATTCTGTGAATCCGTCGTCAGCCAGGTTTTCAGGTTATGGCTCTGTCGCCCAGACCAT
CGCAGTCAAGCCGCCTGCTGAGACTGTCTCCCTGGGAACCGAGGACGGGAATCTTTTGGAAGCTGCACTG
ACCTCACACAAGTACCCGCATATTCCCTTCATGCCAACTCTACACTGTGTCACGCACAACGGTGCCCAGA
AGTCGCAAGTTGTCATTCCGTCGCCCAAATCTGCAGATGGCAAAACCTTAGGGATGCTTGTCCCTAATGC
GGTGGCTATTTCTGCAGTGATGGAATCCTCAAATTCAGCCCCTGTTGGAATCCTAGGCCCGGCAGCTTCT
GGGGAGTCAGAGAAACACCTTGAGTTGTTAGCTTCCCCTTTACCTCTCCCATCAACCTTCCTCCCACACA
GCAGTGCGCCTGCTTTGCAGCTGACATTACAGAGTCTAAAGTTACAGCCACCACAGGGATCTTCTGACAG
TTGTCCAGTTAGTATCCCACCACAACCAACCGGAAGTCTGAGCATCGGATCACCAAACACTGCCTTTATT
CCTGTCCATAACCCAGGTAGTTTCCCAGGGTCTCCTGTGGCTACCACGGATCCCATCACAAAATCCGCAC
CCCAAGTGGTAGGACTAAATCAAATGGTGCCTCAGATTGAGGGGAACACAGGGACAGTCCCTCAGCCGAG
CAATGTGAAGGTAGTTCTTCCGGCAGCGGGCCTCTCAGCTGCACAGCCACCAGCTTCCTTCCCCTTTCCA
GGCTCACCCCAGGCTGCCAGTGCACTCCCCACCCAGAATTCCAGTGCGCTCAACGCAGCCACTTCTGCCC
AGCCAGCAAGCACAGGCATCAGTCCATCCCAGTCCACAGTTCCCCCTGCTGTTCCCACCCACACCCCAGG
CCCTGCCCCGAGCCCCAGCCCTGCCTTGACACACAGTACTGCACAGAGCGACAGCACGTCGTACATCAGT
GCTGTGGGGAACACGAATGCTAACGGGACCATAGTGCCACCACAGCAGATGGGTCCCTGTGGTTCTTGTG
GGCGAAGGTGCAGCTGCGGGACCAATGGAAACCTCCAGCTAAATAGTTACTATTATCCCAACCCAATGCC
TGGACCAATGTACCGACTCCCATCATTCTTCACTCTGCCATCCATTTGCAATGGCAGCTACCTCAACCAA
GCACATCAGAGCAATGGAAACCAACTTCCTTTTTTTCTGCCTCAGACTCCATATGCAAATGGACTGGTGC
ATGACCCAGTCATGGGGAGCCAAGCCAGCTATGGCATGCAGCAGATGGCAGGATTTGGGAGATTGTATCC
TGTATATCCAGCACCTAATGTAGTTGCCAACACCAGTGGTTCTGGGCCCAAGAAGAATGGGAATGTCTCA
TGTTACAATTGTGGTGTAAGCGGACACTATGCACAAGACTGTAAGCAGTCATCCATGGAGGCCAATCAGC
AAGGTAATCCCACTAACTCCCAGAGGACTTGTTTTTGA

Translation (1155 aa):
MLRMKLPPKSTHPSEPPPDAEEPEADARPGAKAPLRRRRDCRPPPPPTGLPRGPPPPPSPPRGLEPPVAS
GPTAGAGMPGGGGHAAALREQERVYEWFGLVLGSAQRLEFMCGLLDLCNPLELRFLGSCLEDLARKDYHY
LRDSEAKANGLSDPGSLADFREPAVRSRLIVYLALLGSENREAAGRLHRLLPQVDAVLRSLRATRAEGSR
GSVEDEPSGDGEQDAEKDGPGPEGSGCAKLGTGGGLGFRAQEELLLLFTMASLHPAFSFHQRVTLREHLE
RLRSALRVEPEDAEVEPSNFAGSRAQNDSACGDYIQSNETGLVEQAQIPPDGLTVAPHRAQREAVHIEKI
MLKGVQRKRADKYWEYTFKVNWSDLSVTTVTKTHQELQEFLLKLPKEFSSESFDKTILKALNQGSLRREE
RRHPDLEPILRQLFSTSPQAFLQSHKVRSFFRSISSESQHNFNNLQSSLKTSKILEHLKEDSSEASSQEE
DVLQHTIIHKKHAGKSPALNVATSCSPLDGLTMQYAEQNGIVDWRNQGCAAIQHSEHCVSSADQHSAEKR
SLSSGNKKKGKPQVEKEKVKKTEDRLNSRINGIRLSAPQHVHGSTVKDMNLDIGSGHDTCGETSSESYSS
PSSPRHDGRESLESEEEKDRDSDSNSEDSVNPSSARFSGYGSVAQTIAVKPPAETVSLGTEDGNLLEAAL
TSHKYPHIPFMPTLHCVTHNGAQKSQVVIPSPKSADGKTLGMLVPNAVAISAVMESSNSAPVGILGPAAS
GESEKHLELLASPLPLPSTFLPHSSAPALQLTLQSLKLQPPQGSSDSCPVSIPPQPTGSLSIGSPNTAFI
PVHNPGSFPGSPVATTDPITKSAPQVVGLNQMVPQIEGNTGTVPQPSNVKVVLPAAGLSAAQPPASFPFP
GSPQAASALPTQNSSALNAATSAQPASTGISPSQSTVPPAVPTHTPGPAPSPSPALTHSTAQSDSTSYIS
AVGNTNANGTIVPPQQMGPCGSCGRRCSCGTNGNLQLNSYYYPNPMPGPMYRLPSFFTLPSICNGSYLNQ
AHQSNGNQLPFFLPQTPYANGLVHDPVMGSQASYGMQQMAGFGRLYPVYPAPNVVANTSGSGPKKNGNVS
CYNCGVSGHYAQDCKQSSMEANQQGNPTNSQRTCF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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