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Report for CCDS48263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48263.1 Public Mus musculus 1 Plcl1 23 108 98 CCDS HistoryNCBI Gene:227120Re-query CCDS DB by CCDS ID:48263.1Re-query CCDS DB by GeneID:227120See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48263.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042986.9 ENSMUSP00000037854.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042986.9Link to Ensembl Protein Viewer:ENSMUSP00000037854.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000042986Re-query CCDS DB by Protein ID:ENSMUSP00000037854
Original member Current member NCBI NM_001114663.1 NP_001108135.1 Accepted alive Link to Nucleotide Sequence:NM_001114663.1Link to Protein Sequence:NP_001108135.1Re-query CCDS DB by Nucleotide ID:NM_001114663Re-query CCDS DB by Protein ID:NP_001108135Link to BLAST:NP_001108135.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001108135.1 1096 Q3USB7 1096 100% 0 0

Chromosomal Locations for CCDS 48263.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 55406388 55406630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55695745 55698219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55701930 55702133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55713421 55713496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55715494 55715603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 55751281 55751463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3291 nt):
ATGGCTGAGGGCGCGGCTAGCAGGGAGGCTCCGGCGCCTCTCGACGTTGCCGGGGGCGAAGACGACCCCC
GAGCCGGCGCCGACGCTGCCTCAGGGGACGCCCCACCCCCGGCCTTGGGGGGCCGGATGAGGGACCGTCG
CAGTGGGGTCGCGCTGCCGGGCGCTGCGGGGGTCCCCGCGGATAGCGAGGCCGGCCTCCTGGAGGCTGCA
CGAGCGACCCCCCGGCGTAGCAGCATCATCAAGGATCCTTCAAACCAAAAATGTGGTGGCAGAAAGAAAA
CAGTGTCTTTCAGTAGCATGCCATCGGAGAAGAAGATTAGCAGTGCCCACGACTGCATTAGCTTCATGCA
GGCTGGCTGCGAGCTGAAGAAAGTGCGCCCGAACTCTCGCATCTACAACCGATTTTTCACCCTAGATACC
GACCTCCAGGCTCTACGCTGGGAACCTTCCAAGAAAGACCTTGAAAAAGCCAAGCTGGACATTTCTGCCA
TCAAAGAGATCAGGCTGGGGAAGAACACAGAGACATTCAGAAACAATGGCCTTGCTGACCAGATCTGTGA
AGACTGTGCCTTCTCCATACTCCATGGGGAAAATTACGAGTCTCTGGACCTAGTTGCCAATTCAGCAGAT
GTGGCAAACATCTGGGTGTCGGGGTTACGGTACCTGGTCTCTCGTAGTAAGCAACCGCTTGATTTTATAG
AGGGTAACCAGAACACACCACGGTTCATGTGGCTGAAAACGGTGTTTGAAGCAGCAGATGTTGATGGAAA
TGGGATTATGTTAGAAGACACTTCAGTGGAGTTAATAAAACAACTCAACCCTACTCTGAAGGAATCTAAG
ATCAGGTTAAAATTTAAAGAAATCCAGAAGAGCAAAGAAAAACTAACTACCCGGGTGACAGAAGAGGAAT
TTTGTGAAGCATTTTGCGAACTGTGCACCAGGCCAGAAGTGTACTTCTTACTTGTCCAGATATCTAAGAA
CAAAGAGTACCTGGATGCCAATGACCTCATGCTCTTCTTAGAAGCTGAGCAAGGTGTCACCCACATCACT
GAGGATATGTGTTTAGACATCATTAGGAGATATGAGCTCTCTGAAGATGGCCGCCAGAAAGGCTTCCTTG
CAATTGATGGGTTTACCCAGTATTTATTGTCTCCAGAATGTGACATTTTTGATCCAGAGCAAAAAAAAGT
TGCCCAAGATATGACCCAACCCTTATCTCACTACTATATCAATGCGTCTCATAATACCTACCTGATAGAA
GATCAGTTCAGGGGACCAGCAGATATCAATGGGTATGTGAGAGCATTGAAGATGGGCTGTAGAAGCATTG
AGCTCGATGTGAGTGATGGTCCGGATAATGAGCCCATCCTTTGTAATAGGAACAACATGGCCATGCACCT
TTCCTTTCGAAGTGTTCTGGAGGTGATAAATAAGTTTGCCTTTGTTGCTTCAGAGTACCCACTCATTCTC
TGCTTGGGGAATCACTGCTCTCTGCCTCAGCAGAAAGTCATGGCACAGCAGATGAAAAAGGTGTTTGGCG
AGAAACTTTATACAGAAGCACCTTTGTCTTCAGAATCCTACCTCCCATCACCTGAAAAACTAAAAAATAT
GATTATTGTGAAAGGAAAGAAATTGCCTTCGGAATCAGATCTGTTAGAAGGAGAAGTGACCGACGAGGAC
GAAGAAGCCGAGATGTCGCGGAGGATGTCAGGGGATTACAACGGTGAGCAGAAACATATCTGGCTCTGCC
GAGAGCTCTCTGACTTGGTATCCATCTGCAAATCTGTTCAGCACAGGGATTTTGAACTGTCTATGAAAAC
CCAAAACTACTGGGAAATGTGTTCATTTAGTGAAACAGAGGCCAGCCGGATTGCCAATGAATACCCAGAG
GACTTCGTGAATTATAACAAGAAGTTCTTATCAAGGGTCTACCCTAGTGCCATGCGGATAGATTCCAGTA
ATTTGAACCCACAGGACTTCTGGAACTGTGGCTGTCAGATTGTGGCGATGAATTTTCAAACTCCCGGTCC
AATGATGGACCTCCACACTGGCTGGTTTCTTCAAAATGGAGGATGTGGCTACGTCCTCAGGCCATCTATC
ATGCGAGATGAAGTTTCGTACTTCAGCGCAAATACAAAGGGCATTGTCCCTGGCGTGTCTCCCCTGGTTC
TTCACATCAAGATCATCAGTGGTCAGAACTTCCCAAAGCCCAAAGGAGCCTGTGCCAAAGGGGATGTCAT
AGACCCCTATGTTTGTGTGGAGATTCACGGAATTCCAGCTGATTGCTGCGAGCAAAGAACTAAAACTGTA
CAACAGAACAGCGATAATCCAATTTTTGATGAAACTTTCGAGTTTCAAGTCAACCTTCCCGAGCTGACCA
TGGTCCGTTTTGTCATTTTGGATGATGATTATATTGGGGATGAGTTCATTGGGCAGTATACGATCCCATT
TGAATGTCTGCAGCCCGGGTACCGGCACGTTCCCTTGCGCTCCTTTGTTGGGGATATCATGGAGCACGTG
ACCCTTTTCGTTCACATAGCAATAACCAATCGCAGTGGAGGAGGAAAACCACAGAAGCGAAGCCTTTCTG
TGAGAATGGGGAAGAAAGTTCGAGAATACACCATGCTCAGGAATATTGGTCTTAAAACCATAGATGATAT
CTTCAAAATAGCAGTTCATCCCTTACGAGAAGCCATAGATATGAGAGAAAACATGCAGAACGCCATAGTG
TCTGTTAAGGAGCTGTGTGGACTCCCGCCGATTGCCAGTCTGAAACAGTGCCTGTTAACCCTGTCCTCTC
GTCTCATCACCAGTGACAGTACTCCCTCTGTGTCTCTGGTGATGAAGGACTGCTTTCCTTACCTGGAGCC
TCTGGGTGCCATTCCAGATGTGCAGAAGAGGATGCTGGCTGCATATGATCTGATGATTCAAGAGAGCCGG
GTCCTCATAGAAATGGCTGACACAGTTCAGGAAAAGATTGTACAGTGTCAGAAAGCAGGGATGGAATTCC
ATGAGGAACTTCATAATCTGGGGGCAAAGGAAGGCTTGAAGGGAAGAAAACTCAACAAGGCCATTGAGAG
CTTCGCTTGGAATATTACGGTATTGAAGGGACAAGGAGACCTGCTGAAGAATGCCAAGAATGAAGCCGTG
GAGAACATAAAGCAAATCCAGCTGGCCTGCTTGTCTTGTGGACTGAGTAAAGGCCCTGGCGGTGGCTCAG
AGGCCAAGGGCAAGCGCAGCTTGGAAGCGATAGAGGAGAAAGAAAGTAGTGAGGAGAACGGGAAGCTGTG
A

Translation (1096 aa):
MAEGAASREAPAPLDVAGGEDDPRAGADAASGDAPPPALGGRMRDRRSGVALPGAAGVPADSEAGLLEAA
RATPRRSSIIKDPSNQKCGGRKKTVSFSSMPSEKKISSAHDCISFMQAGCELKKVRPNSRIYNRFFTLDT
DLQALRWEPSKKDLEKAKLDISAIKEIRLGKNTETFRNNGLADQICEDCAFSILHGENYESLDLVANSAD
VANIWVSGLRYLVSRSKQPLDFIEGNQNTPRFMWLKTVFEAADVDGNGIMLEDTSVELIKQLNPTLKESK
IRLKFKEIQKSKEKLTTRVTEEEFCEAFCELCTRPEVYFLLVQISKNKEYLDANDLMLFLEAEQGVTHIT
EDMCLDIIRRYELSEDGRQKGFLAIDGFTQYLLSPECDIFDPEQKKVAQDMTQPLSHYYINASHNTYLIE
DQFRGPADINGYVRALKMGCRSIELDVSDGPDNEPILCNRNNMAMHLSFRSVLEVINKFAFVASEYPLIL
CLGNHCSLPQQKVMAQQMKKVFGEKLYTEAPLSSESYLPSPEKLKNMIIVKGKKLPSESDLLEGEVTDED
EEAEMSRRMSGDYNGEQKHIWLCRELSDLVSICKSVQHRDFELSMKTQNYWEMCSFSETEASRIANEYPE
DFVNYNKKFLSRVYPSAMRIDSSNLNPQDFWNCGCQIVAMNFQTPGPMMDLHTGWFLQNGGCGYVLRPSI
MRDEVSYFSANTKGIVPGVSPLVLHIKIISGQNFPKPKGACAKGDVIDPYVCVEIHGIPADCCEQRTKTV
QQNSDNPIFDETFEFQVNLPELTMVRFVILDDDYIGDEFIGQYTIPFECLQPGYRHVPLRSFVGDIMEHV
TLFVHIAITNRSGGGKPQKRSLSVRMGKKVREYTMLRNIGLKTIDDIFKIAVHPLREAIDMRENMQNAIV
SVKELCGLPPIASLKQCLLTLSSRLITSDSTPSVSLVMKDCFPYLEPLGAIPDVQKRMLAAYDLMIQESR
VLIEMADTVQEKIVQCQKAGMEFHEELHNLGAKEGLKGRKLNKAIESFAWNITVLKGQGDLLKNAKNEAV
ENIKQIQLACLSCGLSKGPGGGSEAKGKRSLEAIEEKESSEENGKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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