NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47667.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47667.1 Public Homo sapiens 7 SRRT 24 110 108 CCDS HistoryNCBI Gene:51593Re-query CCDS DB by CCDS ID:47667.1Re-query CCDS DB by GeneID:51593See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47667.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000618411.4 ENSP00000483556.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618411.4Link to Ensembl Protein Viewer:ENSP00000483556.1Re-query CCDS DB by Nucleotide ID:ENST00000618411Re-query CCDS DB by Protein ID:ENSP00000483556
Original member Current member NCBI NM_001128854.2 NP_001122326.1 Accepted alive Link to Nucleotide Sequence:NM_001128854.2Link to Protein Sequence:NP_001122326.1Re-query CCDS DB by Nucleotide ID:NM_001128854Re-query CCDS DB by Protein ID:NP_001122326Link to BLAST:NP_001122326.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001122326.1 871 Q9BXP5-4 871 100% 0 0

Chromosomal Locations for CCDS 47667.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 100875591 100875712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100881285 100881413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100881659 100881805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100882053 100882241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100884070 100884239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100884368 100884552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100884740 100884838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100884923 100885040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100885216 100885370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100885701 100885762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100885863 100885941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100886247 100886435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100886795 100886968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100887047 100887200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100887320 100887513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100887703 100887859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100888054 100888143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100888257 100888383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 100888474 100888549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2616 nt):
ATGGGTGACAGTGATGACGAGTACGATCGAAGGCGCAGGGACAAGTTCAGAAGAGAGCGCAGCGACTACG
ACCGTTCCCGCGAGAGAGATGAAAGACGTCGAGGGGACGATTGGAATGACAGAGAGTGGGACCGTGGCCG
TGAGCGCCGTAGTCGGGGTGAATATCGGGACTATGACCGGAATCGGCGAGAGCGCTTCTCGCCACCTCGC
CACGAACTCAGCCCGCCACAGAAGCGCATGAGGAGAGACTGGGATGAGCACAGCTCTGACCCATACCACA
GTGGCTATGAGATGCCCTATGCTGGGGGGGGTGGGGGCCCAACTTATGGCCCCCCTCAGCCCTGGGGCCA
CCCTGACGTCCACATCATGCAGCACCATGTCCTGCCTATCCAGGCCAGGCTGGGCAGCATTGCAGAGATT
GACCTGGGTGTGCCGCCGCCCGTGATGAAGACCTTCAAGGAGTTTCTCCTCTCCCTGGATGACTCGGTGG
ATGAGACGGAGGCCGTCAAGCGCTATAATGACTACAAGCTGGATTTCCGGAGGCAACAGATGCAGGATTT
CTTCCTGGCGCACAAAGATGAGGAGTGGTTTCGGTCTAAGTACCACCCAGATGAGGTGGGGAAGCGTCGG
CAGGAGGCCCGGGGGGCCCTGCAAAACCGACTGAGGGTCTTCCTGTCCCTCATGGAGACTGGCTGGTTTG
ATAACCTTCTCCTGGACATAGACAAAGCTGATGCCATTGTCAAGATGCTGGATGCAGCCGTGATTAAGAT
GGAAGGAGGCACGGAGAATGATCTTCGCATCCTGGAGCAGGAGGAGGAGGAGGAGCAGGCAGGAAAGCCT
GGGGAGCCCAGCAAGAAAGAAGAAGGACGGGCTGGAGCAGGCCTAGGGGACGGGGAGCGCAAAACCAACG
ACAAGGATGAGAAGAAGGAAGACGGCAAGCAGGCTGAGAATGACAGTTCTAATGATGACAAAACAAAGAA
GTCGGAGGGTGATGGGGACAAGGAAGAGAAGAAAGAAGACTCCGAGAAGGAAGCCAAAAAGAGTAGCAAG
AAGCGGAACCGGAAGCACAGTGGTGACGACAGCTTTGACGAGGGCAGCGTGTCAGAGTCTGAGTCGGAGT
CAGAGAGCGGCCAGGCTGAGGAGGAGAAGGAGGAGGCCGAAGCGCTCAAGGAGAAGGAGAAGCCCAAGGA
AGAAGAATGGGAGAAGCCCAAGGACGCCGCGGGGCTGGAGTGCAAGCCGCGGCCGCTGCATAAGACCTGC
TCCCTCTTCATGCGCAACATCGCGCCCAACATCTCCCGGGCCGAGATCATCTCCCTTTGTAAAAGGTACC
CAGGCTTTATGCGGGTGGCGCTCTCAGAGCCCCAGCCAGAGAGGAGGTTTTTCCGTCGTGGCTGGGTGAC
CTTCGACCGCAGTGTTAACATTAAAGAGATCTGTTGGAACCTGCAGAACATCCGTCTCCGGGAGTGTGAG
CTGAGCCCTGGTGTGAACAGGGACCTGACCCGGCGCGTTCGCAACATCAACGGCATCACCCAGCACAAGC
AGATTGTGCGCAACGACATCAAGCTGGCGGCCAAGCTGATCCACACGCTGGATGACAGGACACAGCTTTG
GGCCTCAGAACCAGGGACGCCTCCCCTGCCCACGAGCCTGCCCTCGCAAAACCCGATCTTGAAGAATATC
ACCGACTACCTGATCGAGGAAGTAAGCGCCGAGGAGGAGGAGCTGCTGGGGAGCAGCGGGGGCGCTCCTC
CTGAGGAGCCTCCTAAGGAAGGGAACCCGGCAGAGATCAACGTGGAGCGGGATGAGAAGTTGATTAAGGT
CTTGGACAAGCTCCTCCTTTACCTGCGCATCGTGCATTCCTTGGATTATTACAACACCTGTGAGTACCCC
AACGAGGACGAGATGCCCAATCGCTGTGGGATCATCCACGTTCGGGGGCCCATGCCACCCAACCGCATCA
GTCACGGGGAAGTGCTGGAGTGGCAGAAGACTTTTGAGGAGAAGCTCACGCCGTTGCTGAGTGTGCGGGA
GTCACTCTCAGAGGAAGAGGCCCAGAAGATGGGGCGCAAAGACCCAGAGCAGGAAGTGGAGAAGTTCGTC
ACCTCCAACACGCAGGAACTGGGCAAGGATAAGTGGCTGTGTCCTCTCAGTGGCAAGAAATTCAAGGGTC
CTGAGTTTGTGCGCAAACATATCTTCAACAAGCATGCAGAGAAAATTGAGGAAGTGAAAAAGGAAGTCGC
GTTTTTTAACAACTTCCTCACTGATGCTAAGCGCCCAGCTCTGCCTGAGATCAAGCCAGCCCAGCCACCT
GGCCCCGCCCAGAGTTTGACCCCAGGACTCCCCTACCCACACCAGACTCCCCAGGGCCTGATGCCCTATG
GTCAGCCCCGGCCCCCGATCTTGGGCTATGGAGCTGGTGCTGTCCGCCCTGCAGTCCCCACAGGAGGCCC
TCCATACCCCCATGCCCCGTATGGTGCTGGTCGAGGGAACTATGATGCCTTCCGAGGCCAGGGAGGTTAT
CCTGGGAAACCTCGCAACAGGATGGTTCGTGGAGACCCAAGGGCCATTGTGGAATATCGGGACCTGGATG
CCCCAGACGATGTTGATTTCTTTTGA

Translation (871 aa):
MGDSDDEYDRRRRDKFRRERSDYDRSRERDERRRGDDWNDREWDRGRERRSRGEYRDYDRNRRERFSPPR
HELSPPQKRMRRDWDEHSSDPYHSGYEMPYAGGGGGPTYGPPQPWGHPDVHIMQHHVLPIQARLGSIAEI
DLGVPPPVMKTFKEFLLSLDDSVDETEAVKRYNDYKLDFRRQQMQDFFLAHKDEEWFRSKYHPDEVGKRR
QEARGALQNRLRVFLSLMETGWFDNLLLDIDKADAIVKMLDAAVIKMEGGTENDLRILEQEEEEEQAGKP
GEPSKKEEGRAGAGLGDGERKTNDKDEKKEDGKQAENDSSNDDKTKKSEGDGDKEEKKEDSEKEAKKSSK
KRNRKHSGDDSFDEGSVSESESESESGQAEEEKEEAEALKEKEKPKEEEWEKPKDAAGLECKPRPLHKTC
SLFMRNIAPNISRAEIISLCKRYPGFMRVALSEPQPERRFFRRGWVTFDRSVNIKEICWNLQNIRLRECE
LSPGVNRDLTRRVRNINGITQHKQIVRNDIKLAAKLIHTLDDRTQLWASEPGTPPLPTSLPSQNPILKNI
TDYLIEEVSAEEEELLGSSGGAPPEEPPKEGNPAEINVERDEKLIKVLDKLLLYLRIVHSLDYYNTCEYP
NEDEMPNRCGIIHVRGPMPPNRISHGEVLEWQKTFEEKLTPLLSVRESLSEEEAQKMGRKDPEQEVEKFV
TSNTQELGKDKWLCPLSGKKFKGPEFVRKHIFNKHAEKIEEVKKEVAFFNNFLTDAKRPALPEIKPAQPP
GPAQSLTPGLPYPHQTPQGLMPYGQPRPPILGYGAGAVRPAVPTGGPPYPHAPYGAGRGNYDAFRGQGGY
PGKPRNRMVRGDPRAIVEYRDLDAPDDVDFF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH