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Report for CCDS47331.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47331.1 Public Homo sapiens 5 PWWP2A 24 110 108 CCDS HistoryNCBI Gene:114825Re-query CCDS DB by CCDS ID:47331.1Re-query CCDS DB by GeneID:114825See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47331.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000456329.7 ENSP00000390462.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000456329.7Link to Ensembl Protein Viewer:ENSP00000390462.2Re-query CCDS DB by Nucleotide ID:ENST00000456329Re-query CCDS DB by Protein ID:ENSP00000390462
Original member Current member NCBI NM_052927.4 NP_443159.1 Accepted alive Link to Nucleotide Sequence:NM_052927.4Link to Protein Sequence:NP_443159.1Re-query CCDS DB by Nucleotide ID:NM_052927Re-query CCDS DB by Protein ID:NP_443159Link to BLAST:NP_443159.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443159.1 560 Q96N64-2 560 100% 0 0

Chromosomal Locations for CCDS 47331.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 160078155 160078168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160080651 160080770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160093101 160094065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160118805 160119388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1683 nt):
ATGGCGGCCGTGGCTGCAGAGGCGGCAGCGACTGCAGCGTCCCCCGGGGAGGGGGGCGCCGGCGAGGCCG
AGCCGGAGATGGAGCCCATCCCCGGCAGTGAGGCCGGCACTGACCCCCTCCCGGTCACGGCCACTGAAGC
GTCTGTGCCGGATGGCGAGACTGACGGGCAGCAATCCGCTCCTCAGGCCGACGAGCCGCCGCTCCCGCCG
CCACCGCCGCCGCCGGGGGAGCTCGCCCGCAGCCCAGAGGCGGTGGGGCCGGAGCTGGAGGCTGAGGAGA
AACTGTCCGTTCGGGTGGCGGAGTCGGCGGCAGCCGCGCCTCAGGGAGGGCCGGAACTTCCACCTTCTCC
TGCATCGCCGCCGGAGCAGCCCCCGGCTCCCGAGGAGCGCGAGGAGCCGCCGCTGCCTCAGCCCGTAGCC
CCGGCGCTCGTGCCGCCGGCGGGCGGGGACTCCACGGTGTCGCAACTGATCCCGGGCTCGGAGGTGCGGG
TCACGCTGGACCACATCATTGAGGACGCGCTTGTCGTGTCGTTCCGCTTCGGGGAGAAGCTCTTCTCCGG
GGTCCTCATGGATCTGTCCAAAAGGTTTGGGCCCCATGGTATCCCTGTGACAGTATTTCCCAAAAGGGAA
TATAAGGATAAACCAGAAGCCATGCCGCTCCAAAGTAATACATTCCAAGAAGGGACAGAAGTCAAGTGTG
AAGCAAATGGTGCTGTTCCCGATGACCCTTCTCCTGTCCCGCATCCCGAGCTGAGCTTGGCTGAAAGCCT
GTGGACTTCCAAACCACCACCTCTCTTCCATGAAGGAGCACCTTATCCTCCCCCTTTGTTTATCAGGGAC
ACATATAACCAATCAATACCTCAGCCACCTCCTCGGAAAATTAAGCGACCCAAACGAAAAATGTACAGGG
AAGAACCCACTTCAATAATGAATGCTATTAAACTACGACCCAGGCAAGTTCTGTGTGATAAATGTAAAAA
CAGTGTTGTTGCTGAAAAAAAGGAAATTAGAAAAGGTAGTAGTGCAACTGACTCTTCTAAATATGAAGAT
AAAAAACGGAGAAATGAAAGTGTAACTACTGTGAACAAAAAACTGAAAACTGACCATAAAGTGGATGGGA
AAAACCAAAATGAAAGCCAGAAAAGAAATGCTGTGGTTAAGGTTTCAAATATTGCTCACAGCAGAGGCAG
AGTAGTAAAAGTTTCTGCTCAGGCAAATACATCAAAAGCTCAGTTAAGTACTAAAAAAGTTCTCCAGAGT
AAGAACATGGATCATGCGAAAGCTCGGGAAGTGTTAAAAATTGCCAAAGAAAAGGCACAAAAGAAGCAAA
ATGAAACCTCTACTTCCAAAAATGCACATTCAAAAGTCCATTTCACACGTCGATATCAGAATCCTAGCTC
AGGTTCCCTTCCACCCCGGGTTCGTTTAAAACCACAGAGGTACAGGAATGAAGAAAATGACTCTTCTCTG
AAGACAGGACTTGAGAAAATGCGGAGTGGCAAGATGGCACCCAAGCCCCAGTCTCGCTGCACCTCTACCC
GCTCAGCAGGTCTCAACAAATGGCAGCTATTACATCAGACAGTGACGAGTCCTGCTGCTCCCTTACAGTG
TCTGACAGACCACTGTGGATTCAGACTGGGAGCATTGAAGTTAACAGTGAAACGGGCAGCACAAAGACAT
TAG

Translation (560 aa):
MAAVAAEAAATAASPGEGGAGEAEPEMEPIPGSEAGTDPLPVTATEASVPDGETDGQQSAPQADEPPLPP
PPPPPGELARSPEAVGPELEAEEKLSVRVAESAAAAPQGGPELPPSPASPPEQPPAPEEREEPPLPQPVA
PALVPPAGGDSTVSQLIPGSEVRVTLDHIIEDALVVSFRFGEKLFSGVLMDLSKRFGPHGIPVTVFPKRE
YKDKPEAMPLQSNTFQEGTEVKCEANGAVPDDPSPVPHPELSLAESLWTSKPPPLFHEGAPYPPPLFIRD
TYNQSIPQPPPRKIKRPKRKMYREEPTSIMNAIKLRPRQVLCDKCKNSVVAEKKEIRKGSSATDSSKYED
KKRRNESVTTVNKKLKTDHKVDGKNQNESQKRNAVVKVSNIAHSRGRVVKVSAQANTSKAQLSTKKVLQS
KNMDHAKAREVLKIAKEKAQKKQNETSTSKNAHSKVHFTRRYQNPSSGSLPPRVRLKPQRYRNEENDSSL
KTGLEKMRSGKMAPKPQSRCTSTRSAGLNKWQLLHQTVTSPAAPLQCLTDHCGFRLGALKLTVKRAAQRH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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