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Report for CCDS46522.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46522.1 Public Homo sapiens 2 PAX3 24 110 108 CCDS HistoryNCBI Gene:5077Re-query CCDS DB by CCDS ID:46522.1Re-query CCDS DB by GeneID:5077See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46522.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409551.7 ENSP00000386750.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409551.7Link to Ensembl Protein Viewer:ENSP00000386750.3Re-query CCDS DB by Nucleotide ID:ENST00000409551Re-query CCDS DB by Protein ID:ENSP00000386750
Original member Current member NCBI NM_001127366.3 NP_001120838.1 Accepted alive Link to Nucleotide Sequence:NM_001127366.3Link to Protein Sequence:NP_001120838.1Re-query CCDS DB by Nucleotide ID:NM_001127366Re-query CCDS DB by Protein ID:NP_001120838Link to BLAST:NP_001120838.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120838.1 483 P23760-6 483 100% 0 0

Chromosomal Locations for CCDS 46522.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 222201408 222201442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 222201944 222202190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 222220140 222220354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 222221222 222221387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 222232078 222232283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 222294167 222294301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 222295528 222295654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 222296978 222297213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 222298531 222298615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGACCACGCTGGCCGGCGCTGTGCCCAGGATGATGCGGCCGGGCCCGGGGCAGAACTACCCGCGTAGCG
GG
TTCCCGCTGGAAGTGTCCACTCCCCTCGGCCAGGGCCGCGTCAACCAGCTCGGCGGTGTTTTTATCAA
C
GGCAGGCCGCTGCCCAACCACATCCGCCACAAGATCGTGGAGATGGCCCACCACGGCATCCGGCCCTGC
GTC
ATCTCGCGCCAGCTGCGCGTGTCCCACGGCTGCGTCTCCAAGATCCTGTGCAGGTACCAGGAGACTG
GC
TCCATACGTCCTGGTGCCATCGGCGGCAGCAAGCCCAAGGTGACAACGCCTGACGTGGAGAAGAAAAT
T
GAGGAATACAAAAGAGAGAACCCGGGCATGTTCAGCTGGGAAATCCGAGACAAATTACTCAAGGACGCG
GTC
TGTGATCGAAACACCGTGCCGTCAGTGAGTTCCATCAGCCGCATCCTGAGAAGTAAATTCGGGAAAG
GT
GAAGAGGAGGAGGCCGACTTGGAGAGGAAGGAGGCAGAGGAAAGCGAGAAGAAGGCCAAACACAGCAT
C
GACGGCATCCTGAGCGAGCGAGCCTCAGCACCCCAATCAGATGAAGGCTCTGATATTGACTCTGAACCA
GAT
TTACCACTAAAGAGGAAACAGCGCAGAAGCCGAACCACCTTCACAGCAGAACAGCTGGAGGAACTGG
AG
CGTGCTTTTGAGAGAACTCATTACCCTGACATTTATACTAGGGAGGAACTGGCCCAGAGGGCGAAGCT
C
ACCGAGGCCCGAGTACAGGTCTGGTTTAGCAACCGCCGTGCAAGATGGAGGAAGCAAGCTGGGGCCAAT
CAA
CTGATGGCTTTCAACCATCTCATTCCCGGGGGGTTCCCTCCCACTGCCATGCCGACCTTGCCAACGT
AC
CAGCTGTCGGAGACCTCTTACCAGCCCACATCTATTCCACAAGCTGTGTCAGATCCCAGCAGCACCGT
T
CACAGACCTCAACCGCTTCCTCCAAGCACTGTACACCAAAGCACGATTCCTTCCAACCCAGACAGCAGC
TCT
GCCTACTGCCTCCCCAGCACCAGGCATGGATTTTCCAGCTATACAGACAGCTTTGTGCCTCCGTCGG
GG
CCCTCCAACCCCATGAACCCCACCATTGGCAATGGCCTCTCACCTCAGGTAATGGGACTCCTGACCAA
C
CACGGTGGGGTACCTCATCAGCCCCAGACTGATTACGCGCTCTCCCCTCTCACCGGGGGTCTGGAACCT
ACC
ACCACGGTGTCGGCCAGCTGCAGTCAGAGACTAGACCATATGAAGAGCTTGGACAGTCTGCCAACAT
CT
CAGTCCTACTGTCCACCCACCTATAGCACCACAGGCTACAGTATGGACCCTGTCACAGGCTACCAATA
T
GGGCAGTATGGACAAAGTGCCTTTCATTATCTCAAGCCAGATATCGCGTAA


Translation (483 aa):
MTTLAGAVPRMMRPGPGQNYPRSGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPC
V
ISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPK
VTTPDVEKKIEEYKRENPGMFSWEIRDKLLKDA
V
CDRNTVPS
VSSISRILRSKFGKGEEEEADLERKEAEESEKKAKHSIDGILSERASAPQSDEGSDIDSEP
D
LPLKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ
VWFSNRRARWRKQAGAN
Q
LMAFNHLIPGGFPPTAMPTLPTYQLSETSYQPTSIPQ
AVSDPSSTVHRPQPLPPSTVHQSTIPSNPDSS
S
AYCLPSTRHGFSSYTDSFVPPSGPSNPMNPTIGNGLSPQ
VMGLLTNHGGVPHQPQTDYALSPLTGGLEP
T
TTVSASCSQRLDHMKSLDSLPTSQSYCPPTYSTTGYSMDPVTGYQYGQYGQ
SAFHYLKPDIA



Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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