NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45133.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45133.1 Public Homo sapiens 14 DPF3 24 110 108 CCDS HistoryNCBI Gene:8110Re-query CCDS DB by CCDS ID:45133.1Re-query CCDS DB by GeneID:8110See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 45133.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381216.8 ENSP00000370614.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381216.8Link to Ensembl Protein Viewer:ENSP00000370614.4Re-query CCDS DB by Nucleotide ID:ENST00000381216Re-query CCDS DB by Protein ID:ENSP00000370614
Original member Current member NCBI NM_012074.5 NP_036206.3 Accepted alive Link to Nucleotide Sequence:NM_012074.5Link to Protein Sequence:NP_036206.3Re-query CCDS DB by Nucleotide ID:NM_012074Re-query CCDS DB by Protein ID:NP_036206Link to BLAST:NP_036206.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036206.3 357 Q92784-2 357 100% 0 0

Chromosomal Locations for CCDS 45133.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 72671136 72671338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72674240 72674368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72693076 72693213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72714423 72714501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72723633 72723728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72731807 72731934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72753264 72753371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72771733 72771893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 72894057 72894088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGGCGACTGTCATTCACAACCCCCTGAAAGCGCTCGGGGACCAGTTCTACAAGGAAGCCATTGAGCACT
GCCGGAGTTACAACTCACGGCTGTGTGCAGAGCGCAGCGTGCGTCTTCCCTTCCTGGACTCACAGACTGG
GGTGGCCCAGAACAACTGCTACATCTGGATGGAGAAGAGGCACCGAGGCCCAGGCCTTGCCCCGGGCCAG
CTGTATACATACCCTGCCCGCTGCTGGCGCAAGAAGAGACGATTGCACCCACCTGAAGATCCAAAACTGC
GGCTGCTGGAGATAAAACCTGAAGTGGAGCTTCCCCTGAAGAAGGATGGGTTCACCTCAGAGAGCACCAC
GCTGGAAGCCTTGCTCCGTGGCGAGGGGGTTGAGAAGAAGGTGGATGCCAGGGAGGAGGAAAGCATCCAG
GAAATACAGAGGGTTTTGGAAAATGATGAAAATGTAGAAGAAGGGAATGAAGAAGAGGATTTGGAAGAGG
ATATTCCCAAGCGAAAGAACAGGACTAGAGGACGGGCTCGCGGCTCTGCAGGGGGCAGGAGGAGGCACGA
CGCCGCCTCTCAGGAAGACCACGACAAACCTTACGTCTGTGACATCTGTGGCAAGCGCTACAAGAACCGA
CCGGGGCTCAGCTACCACTATGCTCACACTCACCTGGCCAGCGAGGAGGGGGATGAAGCTCAAGACCAGG
AGACTCGGTCCCCACCCAACCACAGAAATGAGAACCACAGGCCCCAGAAAGGACCGGATGGAACAGTCAT
TCCCAATAACTACTGTGACTTCTGCTTGGGGGGCTCCAACATGAACAAGAAGAGTGGGCGGCCTGAAGAG
CTGGTGTCCTGCGCAGACTGTGGACGCTCTGCTCATTTGGGAGGAGAAGGCAGGAAGGAGAAGGAGGCAG
CGGCCGCAGCACGTACCACGGAGGACTTATTCGGTTCCACGTCAGAAAGTGACACGTCAACTTTCCACGG
CTTTGATGAGGACGATTTGGAAGAGCCTCGCTCCTGTCGAGGACGCCGCAGTGGCCGGGGTTCGCCCACA
GCAGATAAAAAGGGCAGTTGCTAA

Translation (357 aa):
MATVIHNPLKALGDQFYKEAIEHCRSYNSRLCAERSVRLPFLDSQTGVAQNNCYIWMEKRHRGPGLAPGQ
LYTYPARCWRKKRRLHPPEDPKLRLLEIKPEVELPLKKDGFTSESTTLEALLRGEGVEKKVDAREEESIQ
EIQRVLENDENVEEGNEEEDLEEDIPKRKNRTRGRARGSAGGRRRHDAASQEDHDKPYVCDICGKRYKNR
PGLSYHYAHTHLASEEGDEAQDQETRSPPNHRNENHRPQKGPDGTVIPNNYCDFCLGGSNMNKKSGRPEE
LVSCADCGRSAHLGGEGRKEKEAAAAARTTEDLFGSTSESDTSTFHGFDEDDLEEPRSCRGRRSGRGSPT
ADKKGSC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH