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Report for CCDS4441.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4441.1 Public Homo sapiens 5 ZNF454 24 110 108 CCDS HistoryNCBI Gene:285676Re-query CCDS DB by CCDS ID:4441.1Re-query CCDS DB by GeneID:285676See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4441.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320129.7 ENSP00000326249.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000320129.7Link to Ensembl Protein Viewer:ENSP00000326249.3Re-query CCDS DB by Nucleotide ID:ENST00000320129Re-query CCDS DB by Protein ID:ENSP00000326249
Original member Current member EBI ENST00000519564.2 ENSP00000430354.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000519564.2Link to Ensembl Protein Viewer:ENSP00000430354.1Re-query CCDS DB by Nucleotide ID:ENST00000519564Re-query CCDS DB by Protein ID:ENSP00000430354
Original member Current member NCBI NM_001178089.3 NP_001171560.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001178089.3Link to Protein Sequence:NP_001171560.1Re-query CCDS DB by Nucleotide ID:NM_001178089Re-query CCDS DB by Protein ID:NP_001171560Link to BLAST:NP_001171560.1
Original member Current member NCBI NM_001178090.3 NP_001171561.1 Accepted alive Link to Nucleotide Sequence:NM_001178090.3Link to Protein Sequence:NP_001171561.1Re-query CCDS DB by Nucleotide ID:NM_001178090Re-query CCDS DB by Protein ID:NP_001171561Link to BLAST:NP_001171561.1
Original member Current member NCBI NM_001323306.2 NP_001310235.1 Accepted alive Link to Nucleotide Sequence:NM_001323306.2Link to Protein Sequence:NP_001310235.1Re-query CCDS DB by Nucleotide ID:NM_001323306Re-query CCDS DB by Protein ID:NP_001310235Link to BLAST:NP_001310235.1
Original member Current member NCBI NM_182594.4 NP_872400.2 Accepted alive Link to Nucleotide Sequence:NM_182594.4Link to Protein Sequence:NP_872400.2Re-query CCDS DB by Nucleotide ID:NM_182594Re-query CCDS DB by Protein ID:NP_872400Link to BLAST:NP_872400.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171560.1 522 Q8N9F8 522 100% 0 0
NP_001171561.1 522 Q8N9F8 522 100% 0 0
NP_001310235.1 522 Q8N9F8 522 100% 0 0
NP_872400.2 522 Q8N9F8 522 100% 0 0

Chromosomal Locations for CCDS 4441.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 178942792 178942824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178946359 178946485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178946897 178946986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178964655 178965973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGGCTGTCAGCCACCTGCCAACCATGGTCCAGGAATCGGTGACCTTCAAGGATGTGGCTATACTGTTCA
CCCAGGAAGAGTGGGGGCAGCTGAGCCCCGCCCAGAGGGCCCTGTACAGGGACGTGATGCTGGAGAACTA
CAGCAACCTGGTCTCACTGGGACTCTTAGGACCCAAACCAGATACGTTTTCCCAGCTAGAAAAAAGGGAA
GTGTGGATGCCAGAGGACACCCCTGGAGGCTTCTGTCTTGACTGGATGACTATGCCTGCCAGTAAGAAAT
CTACTGTCAAGGCAGAGATTCCTGAAGAAGAATTGGATCAATGGACAATAAAGGAAAGATTCAGTAGCAG
TAGTCACTGGAAGTGTGCTAGCCTGCTGGAGTGGCAATGTGGAGGCCAGGAGATCAGTTTGCAGCGAGTG
GTACTCACTCACCCCAACACCCCATCACAGGAATGTGATGAATCCGGGAGCACTATGAGCTCATCTCTTC
ACAGTGATCAAAGTCAGGGATTTCAACCTAGCAAAAATGCCTTTGAGTGTAGTGAGTGTGGAAAAGTCTT
CTCTAAGAGTTCAACTCTTAATAAACATCAGAAAATTCATAATGAAAAAAATGCAAATCAGAAAATTCAT
ATTAAGGAGAAAAGATATGAATGTAGAGAATGTGGGAAAGCCTTTCACCAGAGTACGCACCTTATCCATC
ACCAAAGAATTCACACTGGCGAGAAACCCTATGAATGTAAGGAATGTGGCAAGGCCTTCTCAGTGAGCTC
CTCACTTACGTACCATCAGAAAATTCATACTGGAGAGAAGCCTTTTGAATGCAACTTATGTGGAAAAGCT
TTTATCCGAAATATACACCTTGCCCATCATCATAGAATACATACTGGAGAGAAACCTTTTAAATGTAACA
TTTGTGAAAAAGCCTTTGTGTGCAGGGCACACCTTACCAAACACCAGAATATCCACAGTGGAGAGAAACC
CTATAAATGCAATGAATGTGGAAAAGCCTTTAATCAGAGTACAAGTTTCCTTCAGCATCAGAGAATTCAC
ACTGGAGAGAAACCCTTTGAATGTAATGAATGTGGGAAGGCCTTCAGGGTGAACTCTTCCCTTACTGAAC
ATCAGAGAATTCATACTGGAGAGAAACCTTATAAATGTAATGAATGTGGGAAAGCTTTCAGGGATAATTC
ATCCTTTGCACGACATCGGAAAATTCACACTGGAGAGAAACCTTACAGATGTGGCTTGTGTGAGAAAGCC
TTTCGGGACCAATCAGCACTAGCCCAACATCAGAGAATTCATACTGGGGAAAAACCTTATACATGTAACA
TATGTGAAAAAGCCTTCAGTGACCATTCAGCCCTTACCCAACATAAGAGAATTCATACTAGGGAAAAACC
TTACAAATGTAAAATCTGTGAGAAAGCCTTTATCCGAAGCACTCACCTGACTCAACATCAGAGGATTCAC
ACAGGAGAGAAACCCTATAAATGTAATAAATGTGGGAAAGCTTTTAACCAGACTGCAAACCTCATTCAGC
ATCAGAGACATCATATTGGAGAGAAGTGA

Translation (522 aa):
MAVSHLPTMVQESVTFKDVAILFTQEEWGQLSPAQRALYRDVMLENYSNLVSLGLLGPKPDTFSQLEKRE
VWMPEDTPGGFCLDWMTMPASKKSTVKAEIPEEELDQWTIKERFSSSSHWKCASLLEWQCGGQEISLQRV
VLTHPNTPSQECDESGSTMSSSLHSDQSQGFQPSKNAFECSECGKVFSKSSTLNKHQKIHNEKNANQKIH
IKEKRYECRECGKAFHQSTHLIHHQRIHTGEKPYECKECGKAFSVSSSLTYHQKIHTGEKPFECNLCGKA
FIRNIHLAHHHRIHTGEKPFKCNICEKAFVCRAHLTKHQNIHSGEKPYKCNECGKAFNQSTSFLQHQRIH
TGEKPFECNECGKAFRVNSSLTEHQRIHTGEKPYKCNECGKAFRDNSSFARHRKIHTGEKPYRCGLCEKA
FRDQSALAQHQRIHTGEKPYTCNICEKAFSDHSALTQHKRIHTREKPYKCKICEKAFIRSTHLTQHQRIH
TGEKPYKCNKCGKAFNQTANLIQHQRHHIGEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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