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Report for CCDS4389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4389.1 Public Homo sapiens 5 BOD1 24 110 108 CCDS HistoryNCBI Gene:91272Re-query CCDS DB by CCDS ID:4389.1Re-query CCDS DB by GeneID:91272See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4389.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311086.9 ENSP00000309644.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311086.9Link to Ensembl Protein Viewer:ENSP00000309644.4Re-query CCDS DB by Nucleotide ID:ENST00000311086Re-query CCDS DB by Protein ID:ENSP00000309644
Original member Current member NCBI NM_138369.3 NP_612378.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138369.3Link to Protein Sequence:NP_612378.1Re-query CCDS DB by Nucleotide ID:NM_138369Re-query CCDS DB by Protein ID:NP_612378Link to BLAST:NP_612378.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_612378.1 185 Q96IK1-1 185 100% 0 0

Chromosomal Locations for CCDS 4389.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 173609239 173609434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 173613131 173613255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 173616200 173616436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGGCGGACGGCGGCGGCGGCGGGGGAACTGGCGCGGTGGGCGGCGGCGGAACTAGCCAGGCCTCTGCCG
GGGCAGCGACTGGCGCTACTGGGGCCAGCGGGGGCGGTGGCCCCATCAACCCGGCCTCGCTGCCTCCCGG
CGACCCGCAGCTCATCGCTCTCATCGTGGAGCAGCTCAAGAGCCGGGGCCTTTTTGACAGCTTCCGCCGG
GACTGCCTGGCCGACGTGGACACCAAGCCAGCTTACCAAAACCTGAGGCAGAAAGTGGATAATTTTGTGT
CAACACATCTGGACAAGCAGGAATGGAATCCTACGATGAACAAAAACCAGTTGCGAAATGGTCTGAGGCA
GAGTGTGGTTCAGTCAGGGATGTTGGAAGCTGGAGTAGACAGGATTATTTCTCAGGTGGTGGATCCAAAA
CTTAACCACATCTTCAGGCCACAAATAGAACGAGCAATTCATGAGTTCCTGGCGGCCCAGAAAAAAGCAG
CTGTGCCAGCACCCCCTCCAGAGCCCGAAGGCCAGGACCCTCCAGCTCCATCTCAGGACACTTCCTAA

Translation (185 aa):
MADGGGGGGTGAVGGGGTSQASAGAATGATGASGGGGPINPASLPPGDPQLIALIVEQLKSRGLFDSFRR
DCLADVDTKPAYQNLRQKVDNFVSTHLDKQEWNPTMNKNQLRNGLRQSVVQSGMLEAGVDRIISQVVDPK
LNHIFRPQIERAIHEFLAAQKKAAVPAPPPEPEGQDPPAPSQDTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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