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Report for CCDS43798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43798.1 Public Homo sapiens 9 SPAG8 24 110 108 CCDS HistoryNCBI Gene:26206Re-query CCDS DB by CCDS ID:43798.1Re-query CCDS DB by GeneID:26206See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43798.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396638.7 ENSP00000379878.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396638.7Link to Ensembl Protein Viewer:ENSP00000379878.2Re-query CCDS DB by Nucleotide ID:ENST00000396638Re-query CCDS DB by Protein ID:ENSP00000379878
Original member Current member NCBI NM_001039592.2 NP_001034681.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039592.2Link to Protein Sequence:NP_001034681.1Re-query CCDS DB by Nucleotide ID:NM_001039592Re-query CCDS DB by Protein ID:NP_001034681Link to BLAST:NP_001034681.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034681.1 485 Q99932-3 485 100% 0 0

Chromosomal Locations for CCDS 43798.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 35809938 35810132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35810247 35810309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35810439 35810553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35810637 35810682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35810883 35811057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35811182 35812001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 35812104 35812147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGGAGACCAACGAGTCTACGGAGGGATCGCGGTCGCGGTCGCGATCTTTAGACATACAGCCCAGCTCCG
AAGGACTGGGGCCCACTTCGGAACCGTTTCCTTCTTCAGATGACAGTCCCAGGTCGGCCCTGGCAGCTGC
AACCGCAGCAGCTGCAGCGGCTGCATCAGCTGCTGCAGCTACTGCAGCCTTCACCACTGCCAAAGCAGCT
GCATTATCTACAAAGACCCCAGCGCCCTGTTCTGAGTTCATGGAGCCGTCCTCTGACCCCAGCCTTCTTG
GGGAGCCCTGTGCGGGACCCGGCTTTACCCACAATATAGCCCATGGGAGTCTTGGCTTTGAGCCCGTCTA
TGTTTCCTGTATTGCTCAGGACACTTGCACTACAACTGACCATAGTTCTAATCCTGGCCCTGTTCCAGGC
TCTAGCTCTGGGCCTGTTCTTGGTTCCAGCTCAGGTGCTGGCCATGGCTCTGGCTCTGGCTCTGGTCCTG
GCTGTGGCTCTGTCCCTGGCTCTGGCTCTGGTCCTGGTCCTGGCTCTGGTCCTGGCTCTGGTCCTGGTCA
TGGCTCTGGCTCTCATCCTGGTCCTGCCTCTGGGCCTGGTCCAGACACTGGCCCTGACTCTGAGCTCAGC
CCCTGTATTCCTCCAGGGTTCAGAAACCTGGTGGCAGATCGGGTCCCTAACTATACCTCCTGGAGTCAGC
ACTGCCCCTGGGAGCCCCAGAAACAACCACCTTGGGAATTTTTGCAAGTCTTAGAACCGGGTGCCCGAGG
ACTATGGAAACCCCCAGACATTAAAGGGAAGCTTATGGTTTGCTATGAAACTTTGCCGCGGGGCCAGTGC
CTCCTCTACAACTGGGAGGAAGAGAGAGCCACCAACCACCTGGATCAAGTCCCAAGCATGCAGGATGGCT
CTGAGAGTTTTTTCTTCCGACACGGACACCGGGGACTGCTGACTATGCAACTAAAGTCACCCATGCCCTC
CAGCACCACCCAGAAAGACTCGTACCAGCCACCAGGAAACGTCTATTGGCCACTTCGAGGGAAGCGTGAA
GCCATGCTGGAGATGCTCCTGCAGCATCAGATCTGTAAAGAGGTGCAGGCAGAACAGGAACCCACAAGGA
AGCTCTTCGAGGTTGAGTCTGTGACACACCATGACTACCGAATGGAGCTGGCACAAGCAGGGACTCCTGC
CCCAACAAAGCCTCACGACTACCGCCAGGAGCAACCTGAGACCTTCTGGATACAGAGGGCACCACAGCTG
CCGGGTGTCAGTAACATCAGGACATTGGACACACCATTCCGGAAGAACTGCAGCTTCTCAACACCAGTAC
CCTTGTCTCTGGGGAAACTTTTGCCCTATGAACCTGAGAATTACCCCTACCAATTGGGAGAAATATCTTC
CCTTCCCTGTCCCGGAGGAAGGCTGGGTGGTGGAGGGGGGAGAATGACTCCTTTCTGA

Translation (485 aa):
METNESTEGSRSRSRSLDIQPSSEGLGPTSEPFPSSDDSPRSALAAATAAAAAAASAAAATAAFTTAKAA
ALSTKTPAPCSEFMEPSSDPSLLGEPCAGPGFTHNIAHGSLGFEPVYVSCIAQDTCTTTDHSSNPGPVPG
SSSGPVLGSSSGAGHGSGSGSGPGCGSVPGSGSGPGPGSGPGSGPGHGSGSHPGPASGPGPDTGPDSELS
PCIPPGFRNLVADRVPNYTSWSQHCPWEPQKQPPWEFLQVLEPGARGLWKPPDIKGKLMVCYETLPRGQC
LLYNWEEERATNHLDQVPSMQDGSESFFFRHGHRGLLTMQLKSPMPSSTTQKDSYQPPGNVYWPLRGKRE
AMLEMLLQHQICKEVQAEQEPTRKLFEVESVTHHDYRMELAQAGTPAPTKPHDYRQEQPETFWIQRAPQL
PGVSNIRTLDTPFRKNCSFSTPVPLSLGKLLPYEPENYPYQLGEISSLPCPGGRLGGGGGRMTPF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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