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Report for CCDS43750.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43750.1 Public Homo sapiens 8 LRRCC1 24 110 108 CCDS HistoryNCBI Gene:85444Re-query CCDS DB by CCDS ID:43750.1Re-query CCDS DB by GeneID:85444See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43750.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360375.8 ENSP00000353538.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360375.8Link to Ensembl Protein Viewer:ENSP00000353538.3Re-query CCDS DB by Nucleotide ID:ENST00000360375Re-query CCDS DB by Protein ID:ENSP00000353538
Original member Current member NCBI NM_033402.5 NP_208325.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033402.5Link to Protein Sequence:NP_208325.3Re-query CCDS DB by Nucleotide ID:NM_033402Re-query CCDS DB by Protein ID:NP_208325Link to BLAST:NP_208325.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_208325.3 1032 Q9C099-1 1032 100% 0 0

Chromosomal Locations for CCDS 43750.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 85107296 85107399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85109595 85109800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85110115 85110180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85112932 85113099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85115100 85115275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85115375 85115584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85123413 85123606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85124792 85124939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85126689 85126837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85129175 85129379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85129919 85130058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85131760 85131961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85134847 85135032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85135789 85135963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85137464 85137627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85138035 85138243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85138338 85138475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85141382 85141517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85145389 85145511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3099 nt):
ATGGAGGCGGCGGCGGCGGTGGTGGCGGCAGAGGCGGAAGTGGAAAACGAAGACGGCGACAGCAGCTGCG
GGGATGTATGCTTCATGGACAAAGGCTTGCAGAGCATATCAGAATTATCTTTAGATTCAACTCTTCATGC
CGTCAATCTTCATTGCAATAACATCTCCAAGATCGAAGCCATTGATCATATTTGGAATTTACAACATCTA
GATCTGTCATCTAATCAAATAAGTAGAATTGAAGGACTAAACACACTGACAAAACTGTGCACATTAAATT
TGTCCTGCAATTTGATTACAAAAGTAGAAGGACTTGAAGAACTAATTAATCTGACTAGACTAAATGTATC
TTATAACCACATAGATGATCTTAGTGGATTGATTCCCCTTCATGGAATTAAGCATAAACTTAGATATATT
GATCTACATAGTAATCGTATAGATAGTATCCATCACTTACTTCAGTGTATGGTAGGATTGCACTTCCTGA
CCAATCTTATTTTGGAGAAAGATGGAGACGATAATCCTGTCTGTCGACTGCCAGGGTACAGAGCAGTTAT
TCTCCAGACTTTGCCACAGCTTAGAATCCTAGATTGCAAGAACATATTTGGTGAACCAGTAAATTTGACA
GAAATAAATTCATCACAGCTGCAGTGCCTAGAAGGTCTTTTGGATAATTTAGTTTCTTCTGATTCTCCCC
TAAATATAAGTGAAGATGAGATCATTGATAGAATGCCAGTGATAACAGCACCTATCGATGAGTTAGTTCC
CTTGGAACAGTTTGCAAGTACACCAAGTGATGCTGTGTTGACGTCTTTTATGTCTGTGTGTCAATCTTCT
GAGCCAGAGAAAAATAATCATGAAAACGATTTGCAGAATGAGATAAAACTTCAGAAATTAGATGACCAAA
TTCTACAACTTCTAAATGAAACTTCTAATTCAATAGATAACGTTCTTGAGAAAGACCCCAGACCAAAAAG
AGACACAGATATAACTTCTGAAAGTGACTATGGAAACAGAAAAGAATGCAATAGAAAAGTTCCTCGAAGA
TCAAAAATCCCTTATGATGCCAAAACCATTCAAACTATTAAGCACCACAATAAAAACTACAACTCTTTTG
TAAGTTGTAATCGTAAAATGAAACCACCTTACCTTAAAGAATTATATGTAAGCTCATCTTTAGCAAACTG
TCCTATGTTACAAGAATCAGAAAAGCCAAAGACTGAAATAATTAAAGTAGACCAAAGTCACTCAGAAGAC
AACACTTACCAGTCCCTTGTTGAACAGCTAGACCAAGAGAGAGAGAAGAGATGGAGAGCTGAGCAAGCCG
AAAATAAACTCATGGATTATATTGATGAGCTGCATAAACATGCAAATGAAAAAGAGGATATTCATAGTCT
GGCTCTACTTACCACAGATAGGCTAAAGGAAATTATTTTTAGAGAGAGAAATTCCAAAGGACAACTCGAA
GTTATGGTTCACAAACTTCAAAATGAAATTAAAAAACTGACTGTTGAACTAATGAAAGCAAAAGATCAAC
AAGAGGATCACCTTAAACACTTAAGAACCCTCGAAAAAACATTAGAAAAAATGGAGAGACAAAAAAGGCA
GCAGCAGGCAGCACAGATAAGACTGATCCAAGAGGTGGAACTCAAAGCTTCAGCTGCCGATAGAGAAATA
TACTTACTTAGAACTTCCCTTCATCGAGAAAGAGAACAAGCGCAACAACTTCATCAACTTCTTGCATTGA
AAGAACAGGAACACAGGAAGGAACTTGAAACAAGGGAGTTTTTTACTGATGCTGACTTCCAGGATGCCTT
AGCTAAAGAAATAGCCAAAGAAGAGAAAAAGCATGAGCAAATGATAAAAGAATACCAAGAGAAAATTGAC
GTGTTAAGCCAGCAGTATATGGATTTAGAAAATGAATTCCGTATTGCTTTAACTGTTGAAGCCAGAAGAT
TTCAAGATGTTAAAGATGGTTTTGAAAATGTTGCAACTGAGTTAGCAAAGAGCAAACATGCTCTTATTTG
GGCTCAACGAAAAGAAAATGAGTCTTCCTCTTTAATTAAAGATCTGACCTGTATGGTAAAGGAACAAAAA
ACAAAACTGGCAGAAGTTTCTAAATTGAAACAAGAAACAGCAGCAAATTTACAGAATCAAATCAACACCC
TTGAAATTTTAATTGAAGATGACAAGCAGAAGAGTATTCAAATAGAACTTCTCAAGCACGAAAAAGTCCA
GCTTATTTCTGAGCTAGCAGCCAAGGAATCACTAATATTTGGTTTAAGGACAGAAAGAAAAGTATGGGGA
CATGAGCTGGCACAACAAGGATCTTCTCTAGCCCAAAATCGTGGAAAATTGGAGGCTCAAATTGAGAGTT
TATCTAGAGAGAATGAATGTCTGCGAAAGACAAATGAAAGTGATAGTGATGCATTAAGAATAAAGTGCAA
AATCATAGACGACCAAACTGAAACTATTAGAAAATTAAAAGATTGTTTACAAGAAAAAGATGAACACATC
AAAAGATTACAAGAAAAGATCACAGAAATAGAAAAATGCACTCAAGAACAACTTGATGAAAAATCTTCAC
AACTGGATGAGGTACTTGAGAAGTTGGAAAGGCACAATGAAAGAAAAGAAAAACTAAAACAACAGTTGAA
AGGAAAGGAAGTAGAACTTGAAGAAATCAGAAAAGCTTACAGTACACTGAATCGGAAGTGGCATGATAAA
GGAGAACTTCTATGTCATCTTGAAACACAAGTAAAAGAAGTGAAAGAAAAATTTGAAAACAAGGAAAAGA
AACTTAAAGCGGAAAGAGACAAAAGTATTGAACTACAAAAGAATGCAATGGAAAAACTTCATAGTATGGA
TGATGCCTTTAAAAGACAAGTTGATGCAATTGTTGAAGCTCATCAAGCTGAAATAGCACAGCTGGCCAAT
GAAAAGCAGAAGTGTATTGATTCTGCAAATTTAAAGGTCCATCAAATTGAAAAAGAAATGCGTGAACTTT
TGGAAGAAACATGCAAGAACAAAAAAACAATGGAAGCAAAAATTAAGCAACTTGCTTTTGCTTTAAATGA
AATTCAGCAAGATATGTGA

Translation (1032 aa):
MEAAAAVVAAEAEVENEDGDSSCGDVCFMDKGLQSISELSLDSTLHAVNLHCNNISKIEAIDHIWNLQHL
DLSSNQISRIEGLNTLTKLCTLNLSCNLITKVEGLEELINLTRLNVSYNHIDDLSGLIPLHGIKHKLRYI
DLHSNRIDSIHHLLQCMVGLHFLTNLILEKDGDDNPVCRLPGYRAVILQTLPQLRILDCKNIFGEPVNLT
EINSSQLQCLEGLLDNLVSSDSPLNISEDEIIDRMPVITAPIDELVPLEQFASTPSDAVLTSFMSVCQSS
EPEKNNHENDLQNEIKLQKLDDQILQLLNETSNSIDNVLEKDPRPKRDTDITSESDYGNRKECNRKVPRR
SKIPYDAKTIQTIKHHNKNYNSFVSCNRKMKPPYLKELYVSSSLANCPMLQESEKPKTEIIKVDQSHSED
NTYQSLVEQLDQEREKRWRAEQAENKLMDYIDELHKHANEKEDIHSLALLTTDRLKEIIFRERNSKGQLE
VMVHKLQNEIKKLTVELMKAKDQQEDHLKHLRTLEKTLEKMERQKRQQQAAQIRLIQEVELKASAADREI
YLLRTSLHREREQAQQLHQLLALKEQEHRKELETREFFTDADFQDALAKEIAKEEKKHEQMIKEYQEKID
VLSQQYMDLENEFRIALTVEARRFQDVKDGFENVATELAKSKHALIWAQRKENESSSLIKDLTCMVKEQK
TKLAEVSKLKQETAANLQNQINTLEILIEDDKQKSIQIELLKHEKVQLISELAAKESLIFGLRTERKVWG
HELAQQGSSLAQNRGKLEAQIESLSRENECLRKTNESDSDALRIKCKIIDDQTETIRKLKDCLQEKDEHI
KRLQEKITEIEKCTQEQLDEKSSQLDEVLEKLERHNERKEKLKQQLKGKEVELEEIRKAYSTLNRKWHDK
GELLCHLETQVKEVKEKFENKEKKLKAERDKSIELQKNAMEKLHSMDDAFKRQVDAIVEAHQAEIAQLAN
EKQKCIDSANLKVHQIEKEMRELLEETCKNKKTMEAKIKQLAFALNEIQQDM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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