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Report for CCDS43218.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43218.1 Public Homo sapiens 4 ZCCHC4 24 110 108 CCDS HistoryNCBI Gene:29063Re-query CCDS DB by CCDS ID:43218.1Re-query CCDS DB by GeneID:29063See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43218.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302874.9 ENSP00000303468.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302874.9Link to Ensembl Protein Viewer:ENSP00000303468.4Re-query CCDS DB by Nucleotide ID:ENST00000302874Re-query CCDS DB by Protein ID:ENSP00000303468
Original member Current member NCBI NM_024936.3 NP_079212.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024936.3Link to Protein Sequence:NP_079212.2Re-query CCDS DB by Nucleotide ID:NM_024936Re-query CCDS DB by Protein ID:NP_079212Link to BLAST:NP_079212.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079212.2 513 Q9H5U6-1 513 100% 0 0

Chromosomal Locations for CCDS 43218.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 25312810 25312936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25314046 25314164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25315318 25315400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25333183 25333458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25333908 25333988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25345548 25345620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25349492 25349642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25351589 25351689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25361859 25361980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25362226 25362301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25364454 25364505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25365022 25365166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25369029 25369164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1542 nt):
ATGGCGGCCTCCAGGAATGGGTTTGAAGCCGTGGAGGCAGAGGGCAGCGCAGGGTGCCGGGGAAGCTCGG
GAATGGAGGTGGTGCTTCCTTTGGATCCTGCCGTCCCCGCCCCGCTGTGCCCTCACGGACCCACTCTTCT
GTTTGTAAAGGTGACCCAAGGGAAAGAAGAAACTCGGAGGTTTTATGCCTGTTCAGCCTGTAGAGATAGA
AAAGACTGTAATTTTTTTCAGTGGGAAGATGAAAAGTTGTCAGGAGCTAGACTTGCTGCCCGAGAAGCTC
ATAACCGAAGATGTCAGCCTCCCCTGTCCCGAACGCAGTGTGTGGAAAGGTACTTGAAGTTTATTGAGTT
GCCCTTGACTCAGAGAAAGTTTTGTCAAACATGTCAGCAGTTGTTGTTACCAGATGACTGGGGGCAACAT
AGTGAGCATCAGGTTCTGGGTAATGTGTCCATTACCCAGTTAAGAAGGCCCAGTCAACTCCTTTATCCAC
TGGAAAACAAGAAGACAAATGCCCAGTATCTGTTTGCTGATCGGAGCTGTCAGTTCTTGGTAGACTTACT
TTCTGCCCTCGGATTCAGAAGAGTACTGTGTGTTGGAACACCAAGGTTGCATGAGCTGATCAAGTTGACA
GCATCAGGTGACAAGAAGTCTAACATTAAAAGCCTTTTATTGGATATTGATTTTCGGTATTCACAGTTTT
ATATGGAAGATAGCTTTTGCCATTATAATATGTTTAACCATCATTTCTTTGATGGAAAGACTGCCCTTGA
AGTATGCAGAGCATTTTTACAGGAAGATAAAGGCGAAGGAATCATTATGGTGACGGATCCTCCGTTTGGT
GGCTTGGTTGAACCTCTGGCTATTACATTCAAGAAGTTAATTGCTATGTGGAAAGAAGGTCAAAGCCAAG
ATGACAGTCACAAAGAACTACCCATTTTCTGGATTTTCCCCTATTTTTTTGAATCCCGAATTTGTCAGTT
TTTTCCAAGCTTCCAGATGCTGGATTACCAGGTAGATTATGATAATCATGCACTTTATAAACACGGAAAG
ACAGGTCGAAAACAGTCTCCCGTGCGTATTTTCACCAACATTCCGCCCAACAAAATAATCCTTCCTACTG
AAGAAGGGTACAGATTTTGCTCTCCGTGTCAACGGTATGTTTCTCTAGAGAATCAACACTGTGAGCTCTG
TAATTCTTGCACATCCAAGGATGGCAGGAAATGGAACCATTGCTTTCTCTGTAAAAAGTGTGTAAAGCCT
TCCTGGATCCACTGTAGCATCTGCAATCACTGTGCTGTTCCAGATCATTCTTGTGAGGGCCCCAAACATG
GCTGCTTTATTTGTGGTGAACTGGATCATAAACGCAGTACTTGTCCTAACATTGCTACATCTAAGAGAGC
TAACAAAGCTGTCAGAAAGCAGAAGCAAAGAAAAAGTAATAAGATGAAAATGGAGACCACGAAAGGACAA
TCCATGAATCATACATCTGCTACAAGGAGAAAGAAAAGGAGGGAAAGAGCCCATCAATATCTTGGCTCTT
AA

Translation (513 aa):
MAASRNGFEAVEAEGSAGCRGSSGMEVVLPLDPAVPAPLCPHGPTLLFVKVTQGKEETRRFYACSACRDR
KDCNFFQWEDEKLSGARLAAREAHNRRCQPPLSRTQCVERYLKFIELPLTQRKFCQTCQQLLLPDDWGQH
SEHQVLGNVSITQLRRPSQLLYPLENKKTNAQYLFADRSCQFLVDLLSALGFRRVLCVGTPRLHELIKLT
ASGDKKSNIKSLLLDIDFRYSQFYMEDSFCHYNMFNHHFFDGKTALEVCRAFLQEDKGEGIIMVTDPPFG
GLVEPLAITFKKLIAMWKEGQSQDDSHKELPIFWIFPYFFESRICQFFPSFQMLDYQVDYDNHALYKHGK
TGRKQSPVRIFTNIPPNKIILPTEEGYRFCSPCQRYVSLENQHCELCNSCTSKDGRKWNHCFLCKKCVKP
SWIHCSICNHCAVPDHSCEGPKHGCFICGELDHKRSTCPNIATSKRANKAVRKQKQRKSNKMKMETTKGQ
SMNHTSATRRKKRRERAHQYLGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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