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Report for CCDS42880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42880.1 Public Homo sapiens 20 DBNDD2 24 110 108 CCDS HistoryNCBI Gene:55861Re-query CCDS DB by CCDS ID:42880.1Re-query CCDS DB by GeneID:55861See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42880.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357275.6 ENSP00000349822.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357275.6Link to Ensembl Protein Viewer:ENSP00000349822.2Re-query CCDS DB by Nucleotide ID:ENST00000357275Re-query CCDS DB by Protein ID:ENSP00000349822
Original member Current member EBI ENST00000360981.8 ENSP00000354250.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360981.8Link to Ensembl Protein Viewer:ENSP00000354250.4Re-query CCDS DB by Nucleotide ID:ENST00000360981Re-query CCDS DB by Protein ID:ENSP00000354250
Original member Current member EBI ENST00000372710.5 ENSP00000361795.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372710.5Link to Ensembl Protein Viewer:ENSP00000361795.4Re-query CCDS DB by Nucleotide ID:ENST00000372710Re-query CCDS DB by Protein ID:ENSP00000361795
Original member Current member EBI ENST00000372712.6 ENSP00000361797.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372712.6Link to Ensembl Protein Viewer:ENSP00000361797.2Re-query CCDS DB by Nucleotide ID:ENST00000372712Re-query CCDS DB by Protein ID:ENSP00000361797
Original member Current member EBI ENST00000372723.7 ENSP00000361808.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372723.7Link to Ensembl Protein Viewer:ENSP00000361808.3Re-query CCDS DB by Nucleotide ID:ENST00000372723Re-query CCDS DB by Protein ID:ENSP00000361808
Original member Current member NCBI NM_001048221.3 NP_001041686.1 Accepted alive Link to Nucleotide Sequence:NM_001048221.3Link to Protein Sequence:NP_001041686.1Re-query CCDS DB by Nucleotide ID:NM_001048221Re-query CCDS DB by Protein ID:NP_001041686Link to BLAST:NP_001041686.1
Original member Current member NCBI NM_001048223.3 NP_001041688.1 Accepted alive Link to Nucleotide Sequence:NM_001048223.3Link to Protein Sequence:NP_001041688.1Re-query CCDS DB by Nucleotide ID:NM_001048223Re-query CCDS DB by Protein ID:NP_001041688Link to BLAST:NP_001041688.1
Original member Current member NCBI NM_001048225.4 NP_001041690.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001048225.4Link to Protein Sequence:NP_001041690.3Re-query CCDS DB by Nucleotide ID:NM_001048225Re-query CCDS DB by Protein ID:NP_001041690Link to BLAST:NP_001041690.3
Original member Current member NCBI NM_001197139.2 NP_001184068.1 Accepted alive Link to Nucleotide Sequence:NM_001197139.2Link to Protein Sequence:NP_001184068.1Re-query CCDS DB by Nucleotide ID:NM_001197139Re-query CCDS DB by Protein ID:NP_001184068Link to BLAST:NP_001184068.1
Original member Current member NCBI NM_001197140.2 NP_001184069.1 Accepted alive Link to Nucleotide Sequence:NM_001197140.2Link to Protein Sequence:NP_001184069.1Re-query CCDS DB by Nucleotide ID:NM_001197140Re-query CCDS DB by Protein ID:NP_001184069Link to BLAST:NP_001184069.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001041686.1 161 Q9BQY9-2 161 100% 0 0
NP_001041688.1 161 Q9BQY9-2 161 100% 0 0
NP_001041690.3 161 Q9BQY9-2 161 100% 0 0
NP_001184068.1 161 Q9BQY9-2 161 100% 0 0
NP_001184069.1 161 Q9BQY9-2 161 100% 0 0

Chromosomal Locations for CCDS 42880.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 45408468 45408606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45408801 45408938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45409932 45410140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (486 nt):
ATGGACCCAAATCCTCGGGCCGCCCTGGAGCGCCAGCAGCTCCGCCTTCGGGAGCGGCAAAAATTCTTCG
AGGACATTTTACAGCCAGAGACAGAGTTTGTCTTTCCTCTGTCCCATCTGCATCTCGAGTCGCAGAGACC
CCCCATAGGTAGTATCTCATCCATGGAAGTGAATGTGGACACACTGGAGCAAGTAGAACTTATTGACCTT
GGGGACCCGGATGCAGCAGATGTGTTCTTGCCTTGCGAAGATCCTCCACCAACCCCCCAGTCGTCTGGGA
TGGACAACCATTTGGAGGAGCTGAGCCTGCCGGTGCCTACATCAGACAGGACCACATCTAGGACCTCCTC
CTCCTCCTCCTCCGACTCCTCCACCAACCTGCATAGCCCAAATCCAAGTGATGATGGAGCAGATACGCCC
TTGGCACAGTCGGATGAAGAGGAGGAAAGGGGTGATGGAGGGGCAGAGCCTGGAGCCTGCAGCTAG

Translation (161 aa):
MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELIDL
GDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSDRTTSRTSSSSSSDSSTNLHSPNPSDDGADTP
LAQSDEEEERGDGGAEPGACS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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