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Report for CCDS42637.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42637.1 Public Homo sapiens 19 ZNF419 24 110 108 CCDS HistoryNCBI Gene:79744Re-query CCDS DB by CCDS ID:42637.1Re-query CCDS DB by GeneID:79744See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42637.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000347466.10 ENSP00000299860.9 Accepted alive Link to Ensembl Transcript Viewer:ENST00000347466.10Link to Ensembl Protein Viewer:ENSP00000299860.9Re-query CCDS DB by Nucleotide ID:ENST00000347466Re-query CCDS DB by Protein ID:ENSP00000299860
Original member Current member NCBI NM_001098494.2 NP_001091964.1 Accepted alive Link to Nucleotide Sequence:NM_001098494.2Link to Protein Sequence:NP_001091964.1Re-query CCDS DB by Nucleotide ID:NM_001098494Re-query CCDS DB by Protein ID:NP_001091964Link to BLAST:NP_001091964.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091964.1 478 Q96HQ0-2 478 100% 0 0

Chromosomal Locations for CCDS 42637.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 57487951 57487983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57490147 57490185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57491468 57491597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57492856 57494090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGGCGGCGGCCGCCCTGAGGGACCCCGCTCAGGTTCCTGTGGCTGCAGACTTGCTTACAGACCATGAGG
AGCAGGGCTATGTGACCTTTGAGGATGTGGCTGTCTACTTCTCCCAGGAGGAATGGAGATTGCTTGATGA
CGCTCAGAGGCTCCTCTACCGCAATGTGATGCTGGAGAACTTTACACTTCTGGCCTCTCTGGGTTGTTGG
CATGGAGCCGAGGCTGAGGAGGCTCCTGAGCAGATTGCTTCTGTAGGACTGCTCAGTTCAAACATTCAGC
AACACCAGAAGCAGCACTGTGGAGAGAAACCCTTAAAAAGACAAGAGGGCAGGGTCCCAGTTTTGAGGAG
TTGCAAAGTTCACCTATCAGAGAAGTCCTTGCAAAGCAGGGAGGTTGGGAAGGCCCTCCTGATCAGCTCA
GGTGTTCTCAAGCACCAGGTGACTCACACAGGAGAGAAGTCACATAGGAGCTCCAAAAGTAGGGAGGCCT
TTCATGCTGGAAAAAGGCATTACAAATGCAGTGAATGTGGGAAAGCCTTTGGTCAGAAATATTTACTTGT
TCAGCACCAGAGACTACATGCTGGGAAAAAGACGTATGAATGCAGTGAATGTGGGAAGTTATTTAGAGAT
ATGTCCAACCTTTTTATACACCAAATAGTTCACACTGGAGAAAGGCCTTACGGGTGTAGTAACTGTGGAA
AATCCTTTAGCCGTAATGCTCACCTCATTGAACACCAGAGAGTTCACACTGGAGAAAAGCCTTTTACATG
CAGTGAATGTGGAAAAGCTTTCAGGCATAATTCCACACTTGTTCAGCATCACAAAATCCACACTGGAGTA
AGGCCTTATGAGTGCAGTGAATGTGGAAAATTGTTTAGTTTCAACTCCAGCCTCATGAAACATCAGAGAA
TTCACACTGGAGAAAGACCTTATAAGTGCAGTGAATGTGGAAAATTCTATAGCCACAAGTCCAACCTTAT
CAAACATTGGCGTGTTCATACTGGAGAAAGGCCTTACAAGTGCAGCGACTGTGGGAAATTTTTTACCCAA
TGCTCAAGCCTCATGCAACATCAAAAAGTTCACACTGGAGAAAAGCCTTTTAAGTGCAATGAATGTGGGA
GATTCTTTAGAGAGAATTCCACCCTAGTTAGACATCAGAGGGTTCACACTGGAGCAAAGCCTTATGAGTG
CAGGGAATGTGGGAAATTTTTTAGCCAAAGCTCAACCCTCATGCAACATCGAAAAGTTCACATTGGAGAA
AAGCCTTTTAAGTGCAATGAATGTGGGAGATTGTTTAGAGAGAATTCCAGCCTTGTTAAACATCAGAGGG
TTCACACTGGAGCAAAGCCTTATGAGTGCAGGGAATGTGGGAAGTTTTTTCGCCACAACTCCAGTCTTTT
TAAACATCGAAGGATTCACACTGGAGAAATGCAGTGA

Translation (478 aa):
MAAAALRDPAQVPVAADLLTDHEEQGYVTFEDVAVYFSQEEWRLLDDAQRLLYRNVMLENFTLLASLGCW
HGAEAEEAPEQIASVGLLSSNIQQHQKQHCGEKPLKRQEGRVPVLRSCKVHLSEKSLQSREVGKALLISS
GVLKHQVTHTGEKSHRSSKSREAFHAGKRHYKCSECGKAFGQKYLLVQHQRLHAGKKTYECSECGKLFRD
MSNLFIHQIVHTGERPYGCSNCGKSFSRNAHLIEHQRVHTGEKPFTCSECGKAFRHNSTLVQHHKIHTGV
RPYECSECGKLFSFNSSLMKHQRIHTGERPYKCSECGKFYSHKSNLIKHWRVHTGERPYKCSDCGKFFTQ
CSSLMQHQKVHTGEKPFKCNECGRFFRENSTLVRHQRVHTGAKPYECRECGKFFSQSSTLMQHRKVHIGE
KPFKCNECGRLFRENSSLVKHQRVHTGAKPYECRECGKFFRHNSSLFKHRRIHTGEMQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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