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Report for CCDS42512.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42512.1 Public Homo sapiens 19 CC2D1A 24 110 108 CCDS HistoryNCBI Gene:54862Re-query CCDS DB by CCDS ID:42512.1Re-query CCDS DB by GeneID:54862See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42512.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318003.11 ENSP00000313601.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000318003.11Link to Ensembl Protein Viewer:ENSP00000313601.6Re-query CCDS DB by Nucleotide ID:ENST00000318003Re-query CCDS DB by Protein ID:ENSP00000313601
Original member Current member NCBI NM_017721.5 NP_060191.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017721.5Link to Protein Sequence:NP_060191.3Re-query CCDS DB by Nucleotide ID:NM_017721Re-query CCDS DB by Protein ID:NP_060191Link to BLAST:NP_060191.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060191.3 951 Q6P1N0-1 951 100% 0 0

Chromosomal Locations for CCDS 42512.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 13906442 13906501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13909823 13909958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13912323 13912438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13912528 13912593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13913168 13913302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13913404 13913638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13918070 13918194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13918504 13918576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13918746 13918817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13918912 13919042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13919130 13919202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13919818 13919951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13920557 13920668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13920750 13920922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13923333 13923455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13923548 13923606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13923695 13923811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13926517 13926590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13926667 13926725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13926821 13926872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13926978 13927077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13927175 13927265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13927893 13928030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13928124 13928188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13929379 13929442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13929534 13929660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13930078 13930154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13930242 13930289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 13930375 13930395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2856 nt):
ATGCACAAGAGGAAAGGACCCCCGGGACCCCCGGGCAGAGGCGCCGCGGCCGCCCGCCAGCTGGGCCTGC
TGGTTGACCTCTCCCCAGATGGCCTGATGATCCCTGAGGACGGGGCTAACGATGAAGAACTGGAGGCTGA
GTTCTTGGCTTTGGTCGGGGGCCAGCCCCCAGCCCTGGAGAAGCTCAAAGGCAAAGGTCCCTTGCCGATG
GAGGCCATTGAGAAGATGGCCAGCCTGTGCATGAGAGACCCGGATGAGGATGAGGAGGAGGGGACGGATG
AGGACGACTTGGAGGCTGATGATGACCTGCTGGCGGAGCTAAATGAGGTCCTTGGAGAGGAGCAGAAGGC
TTCAGAGACCCCACCTCCTGTGGCCCAGCCGAAGCCTGAGGCCCCTCATCCGGGGCTGGAGACCACCTTG
CAGGAGAGGCTGGCGCTCTATCAGACAGCAATTGAAAGCGCCAGACAAGCTGGAGACAGCGCCAAGATGC
GGCGCTACGATCGGGGGCTTAAAACACTGGAAAACCTGCTCGCCTCCATCCGTAAGGGCAATGCCATTGA
CGAAGCGGACATCCCGCCGCCAGTGGCCATAGGAAAAGGCCCGGCGTCCACGCCTACCTACAGCCCTGCA
CCCACCCAGCCGGCCCCTAGAATCGCGTCAGCCCCAGAGCCCAGGGTCACCCTGGAGGGACCTTCTGCCA
CCGCCCCAGCCTCATCTCCAGGCTTGGCTAAGCCCCAGATGCCCCCAGGTCCCTGCAGCCCTGGCCCTCT
GGCCCAGTTGCAGAGCCGCCAGCGCGACTACAAGCTGGCTGCCCTCCACGCCAAGCAGCAGGGAGATACC
ACTGCTGCCGCTAGACACTTCCGCGTGGCTAAGAGCTTTGATGCTGTCTTGGAGGCCCTGAGCCGGGGTG
AGCCCGTGGACCTCTCCTGCCTGCCCCCTCCACCCGACCAGCTGCCCCCAGACCCACCGTCACCACCGTC
GCAGCCTCCGACCCCCGCTACGGCGCCCTCCACAACAGAGGTGCCCCCACCCCCGAGGACCCTGCTGGAG
GCGCTGGAGCAGCGGATGGAGCGGTACCAGGTGGCCGCAGCCCAGGCCAAGAGCAAGGGGGACCAGCGGA
AAGCTCGAATGCACGAGCGCATCGTCAAGCAATACCAAGATGCCATCCGAGCCCACAAGGCTGGCCGAGC
CGTGGATGTCGCTGAATTGCCCGTGCCCCCAGGCTTCCCCCCAATCCAGGGCCTGGAGGCCACCAAGCCC
ACCCAGCAGAGTCTGGTGGGTGTCCTGGAGACTGCCATGAAGCTGGCCAACCAGGATGAAGGCCCAGAGG
ATGAAGAGGATGAGGTGCCTAAGAAGCAGAACAGCCCTGTGGCCCCCACAGCCCAGCCCAAAGCCCCACC
CTCAAGAACTCCCCAGTCGGGATCAGCCCCAACAGCCAAAGCGCCCCCCAAAGCCACATCCACCAGAGCC
CAGCAGCAGCTGGCCTTCCTAGAGGGCCGCAAGAAGCAGCTCCTGCAGGCCGCACTGCGAGCCAAGCAGA
AAAACGACGTGGAGGGTGCCAAGATGCACCTGCGCCAAGCCAAGGGACTGGAGCCTATGCTGGAGGCCTC
GCGCAATGGGCTGCCTGTGGACATCACCAAGGTGCCGCCTGCCCCTGTCAACAAGGACGACTTTGCCCTG
GTCCAGCGGCCTGGCCCGGGTCTGTCTCAGGAGGCCGCCCGGCGCTATGGTGAACTCACCAAGCTCATAC
GGCAGCAGCACGAGATGTGCCTGAACCACTCAAACCAATTCACCCAGCTGGGCAACATCACTGAAACCAC
CAAGTTTGAAAAGTTGGCGGAGGACTGTAAGCGGAGCATGGACATTCTGAAGCAAGCCTTCGTCCGGGGT
CTCCCCACGCCCACCGCCCGCTTTGAGCAAAGGACCTTCAGCGTCATCAAGATCTTCCCTGACCTCAGCA
GCAACGACATGCTCCTCTTCATCGTGAAGGGCATCAACTTGCCCACACCCCCAGGACTGTCCCCTGGCGA
TCTGGATGTCTTTGTTCGGTTTGACTTCCCCTATCCCAACGTGGAAGAAGCTCAGAAAGACAAGACCAGT
GTGATCAAGAACACAGACTCCCCTGAGTTCAAGGAGCAGTTCAAACTCTGCATCAACCGCAGCCACCGTG
GCTTCCGAAGGGCCATCCAGACCAAGGGCATCAAGTTCGAAGTGGTTCACAAGGGGGGGCTGTTCAAGAC
TGACCGGGTGCTGGGGACAGCCCAGCTGAAGCTGGATGCACTGGAGATAGCATGTGAGGTCCGGGAGATC
CTTGAGGTCCTGGATGGTCGCCGGCCCACAGGGGGGCGACTGGAGGTAATGGTCCGGATTCGGGAGCCAC
TGACAGCCCAGCAGTTGGAGACGACGACAGAGAGGTGGCTGGTCATTGACCCTGTGCCGGCAGCTGTGCC
CACACAGGTTGCTGGGCCCAAAGGGAAGGCCCCTCCTGTGCCTGCCCCTGCAAGGGAGTCAGGGAACAGA
TCAGCCCGGCCCCTGCATAGCCTCAGTGTGCTGGCGTTTGACCAAGAGCGTCTGGAGCGGAAGATCCTGG
CCCTCAGGCAGGCGCGGCGGCCGGTGCCCCCAGAAGTGGCCCAGCAGTACCAGGACATCATGCAACGCAG
CCAGTGGCAGAGGGCACAGCTGGAGCAGGGGGGTGTGGGCATCCGACGGGAATACGCAGCCCAGCTGGAG
CGGCAGCTGCAGTTCTACACGGAGGCTGCCCGGCGCCTGGGCAACGATGGCAGCAGGGATGCTGCAAAGG
AGGCGCTCTATAGGCGGAATCTGGTAGAGAGTGAGCTGCAGCGGCTCCGCAGGTGA

Translation (951 aa):
MHKRKGPPGPPGRGAAAARQLGLLVDLSPDGLMIPEDGANDEELEAEFLALVGGQPPALEKLKGKGPLPM
EAIEKMASLCMRDPDEDEEEGTDEDDLEADDDLLAELNEVLGEEQKASETPPPVAQPKPEAPHPGLETTL
QERLALYQTAIESARQAGDSAKMRRYDRGLKTLENLLASIRKGNAIDEADIPPPVAIGKGPASTPTYSPA
PTQPAPRIASAPEPRVTLEGPSATAPASSPGLAKPQMPPGPCSPGPLAQLQSRQRDYKLAALHAKQQGDT
TAAARHFRVAKSFDAVLEALSRGEPVDLSCLPPPPDQLPPDPPSPPSQPPTPATAPSTTEVPPPPRTLLE
ALEQRMERYQVAAAQAKSKGDQRKARMHERIVKQYQDAIRAHKAGRAVDVAELPVPPGFPPIQGLEATKP
TQQSLVGVLETAMKLANQDEGPEDEEDEVPKKQNSPVAPTAQPKAPPSRTPQSGSAPTAKAPPKATSTRA
QQQLAFLEGRKKQLLQAALRAKQKNDVEGAKMHLRQAKGLEPMLEASRNGLPVDITKVPPAPVNKDDFAL
VQRPGPGLSQEAARRYGELTKLIRQQHEMCLNHSNQFTQLGNITETTKFEKLAEDCKRSMDILKQAFVRG
LPTPTARFEQRTFSVIKIFPDLSSNDMLLFIVKGINLPTPPGLSPGDLDVFVRFDFPYPNVEEAQKDKTS
VIKNTDSPEFKEQFKLCINRSHRGFRRAIQTKGIKFEVVHKGGLFKTDRVLGTAQLKLDALEIACEVREI
LEVLDGRRPTGGRLEVMVRIREPLTAQQLETTTERWLVIDPVPAAVPTQVAGPKGKAPPVPAPARESGNR
SARPLHSLSVLAFDQERLERKILALRQARRPVPPEVAQQYQDIMQRSQWQRAQLEQGGVGIRREYAAQLE
RQLQFYTEAARRLGNDGSRDAAKEALYRRNLVESELQRLRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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