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Report for CCDS41215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41215.1 Public Mus musculus X Mid1 23 108 98 CCDS HistoryNCBI Gene:17318Re-query CCDS DB by CCDS ID:41215.1Re-query CCDS DB by GeneID:17318See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41215.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036753.11 ENSMUSP00000038765.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036753.11Link to Ensembl Protein Viewer:ENSMUSP00000038765.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000036753Re-query CCDS DB by Protein ID:ENSMUSP00000038765
Original member Current member EBI ENSMUST00000112104.7 ENSMUSP00000107732.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112104.7Link to Ensembl Protein Viewer:ENSMUSP00000107732.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112104Re-query CCDS DB by Protein ID:ENSMUSP00000107732
Original member Current member EBI ENSMUST00000112105.7 ENSMUSP00000107733.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112105.7Link to Ensembl Protein Viewer:ENSMUSP00000107733.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112105Re-query CCDS DB by Protein ID:ENSMUSP00000107733
Original member Current member EBI ENSMUST00000171433.7 ENSMUSP00000126746.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171433.7Link to Ensembl Protein Viewer:ENSMUSP00000126746.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171433Re-query CCDS DB by Protein ID:ENSMUSP00000126746
Original member Current member EBI ENSMUST00000163810.8 ENSMUSP00000128176.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163810.8Link to Ensembl Protein Viewer:ENSMUSP00000128176.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000163810Re-query CCDS DB by Protein ID:ENSMUSP00000128176
Original member NCBI NM_010797.3 NP_034927.2 Updated not alive Link to Nucleotide Sequence:NM_010797.3Link to Protein Sequence:NP_034927.2Re-query CCDS DB by Nucleotide ID:NM_010797Re-query CCDS DB by Protein ID:NP_034927
Current member NCBI NM_010797.4 NP_034927.2 Accepted alive Link to Nucleotide Sequence:NM_010797.4Link to Protein Sequence:NP_034927.2Re-query CCDS DB by Nucleotide ID:NM_010797Re-query CCDS DB by Protein ID:NP_034927Link to BLAST:NP_034927.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034927.2 680 O70583-1 680 100% 0 0

Chromosomal Locations for CCDS 41215.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 169927010 169927669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169966063 169966158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169976922 169977029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169981885 169982033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169983956 169984083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169984999 169985142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169985897 169986097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169987559 169987766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 169988863 169989211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2043 nt):
ATGGAAACACTGGAGTCGGAGCTGACCTGTCCTATTTGTCTGGAGCTTTTTGAGGACCCTCTCCTGCTTC
CCTGCGCACATAGCCTCTGCTTCAACTGTGCCCACCGAATCCTGGTCTCTCACTGTGCCACCAACGAGCC
TGTGGAGTCCATCAACGCCTTCCAGTGCCCCACCTGCCGGCATGTCATCACGCTCAGCCAGCGAGGTCTA
GACGGGCTCAAGCGCAACGTCACCCTCCAAAACATCATTGACAGATTTCAGAAAGCATCTGTGAGCGGGC
CCAACTCTCCCAGTGAGACCCGCAGGGAACGGGCCTTTGACGCCAACACCATGTCCTCTGCCGAGAAGGT
TCTCTGCCAGTTCTGTGACCAGGATCCTGCCCAGGATGCTGTGAAGACTTGCGTTACTTGTGAAGTGTCC
TACTGTGATGAGTGCCTGAAAGCCACTCATCCGAACAAGAAGCCCTTTACAGGCCATCGTCTGATTGAGC
CAATCCCGGACTCGCACATCCGGGGGCTGATGTGCCTGGAGCACGAGGATGAGAAGGTGAATATGTACTG
TGTGACCGATGACCAGTTAATCTGTGCCTTGTGTAAACTGGTTGGGCGGCACCGCGATCATCAGGTGGCA
GCTTTGAGTGAGCGCTATGACAAATTGAAGCAAAACTTGGAGAGTAATCTCACCAATCTTATTAAGAGAA
ACACAGAACTGGAGACTCTTTTGGCTAAACTCATCCAAACTTGTCAACATGTTGAAGTCAATGCATCCCG
TCAAGAAGCCAAACTGACAGAAGAATGTGATCTTCTCATTGAAATCATTCAGCAACGAAGACAAATTATT
GGAACAAAGATTAAAGAAGGCAAGGTGATCAGGCTCCGCAAGTTAGCTCAGCAGATTGCAAACTGTAAAC
AGTGCCTTGAGAGGTCTGCATCGCTCATCTCGCAAGCGGAGCACTCGCTGAAGGAAAATGACCACGCCCG
TTTTCTACAGACAGCAAAGAATATCACTGAGAGAGTCTCCATGGCAACTGCATCCTCCCAGGTCCTAATT
CCCGAAATCAACCTCAATGACACGTTTGACACTTTTGCCTTGGATTTTTCCCGGGAGAAGAAACTGCTAG
AATGTCTGGATTACCTAACAGCTCCCAACCCTCCCGCGATTAGAGAAGAGCTCTGCACCGCTTCCTACGA
CACCATCACCGTCCACTGGACCTCAGAGGACGAGTTCAGCGTGGTCTCCTACGAGCTCCAGTACACCATA
TTCACCGGACAAGCCAATGTTGTCAACGTGGCCTGTGACGGCACCTGTCTCCTCGGCTCCGCAGGTCTGT
GTAACTCGGCGGACAGCTGGATGATCGTGCCCAACATCAAGCAGAACCACTACACCGTGCACGGCCTGCA
AAGTGGCACCAAGTATATCTTCACGGTGAAGGCCATCAACCAGGCGGGCAGCCGTAGCAGCGAGCCCGGA
AAGCTGAAGACCAACAGTCAGCCGTTTAGACTGGATCCCAAATCGGCTCATCGCAAGCTGAAGGTGTCCC
ACGACAACCTGACTGTCGAGCGCGACGAGTCGTCCTCTAAGAAGAGTCACGCGCCGGAGCGCTTCGCTGG
TCAGGGGAGCTACGGAGTGGCTGGCAACGTGTTCATCGACAGCGGCCGTCACTACTGGGAAGTGGTCACC
AGCGGAAGCACATGGTACGCCATCGGCCTGGCGTACAGATCGGCGCCGAAACACGAGTGGATCGGGAAGA
ACGCGGCGTCCTGGGCCCTCTGCCGCTGCCACAACCACTGGGCGGTGCGACACGACGGCAAGGAGACCCC
CATCGCGCCGGCCCCTCACCTCAGGCGCGTCGGCGTCCTGCTGGACTACGACAACGGCTCCATCGCCTTC
TACGACGCTCTGAGCTCCGTCCACCTCCACACCTTCCACGCGGCGCTCGCGCAGCCCGTGTGCCCCACCT
TCACCGTGTGGAACAAGTGTCTGACCATCGTCACGGGTCTGCCCATCCCGGACCATCTGGACTGTACGGA
GCAGCGACCTTGA

Translation (680 aa):
METLESELTCPICLELFEDPLLLPCAHSLCFNCAHRILVSHCATNEPVESINAFQCPTCRHVITLSQRGL
DGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERAFDANTMSSAEKVLCQFCDQDPAQDAVKTCVTCEVS
YCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVA
ALSERYDKLKQNLESNLTNLIKRNTELETLLAKLIQTCQHVEVNASRQEAKLTEECDLLIEIIQQRRQII
GTKIKEGKVIRLRKLAQQIANCKQCLERSASLISQAEHSLKENDHARFLQTAKNITERVSMATASSQVLI
PEINLNDTFDTFALDFSREKKLLECLDYLTAPNPPAIREELCTASYDTITVHWTSEDEFSVVSYELQYTI
FTGQANVVNVACDGTCLLGSAGLCNSADSWMIVPNIKQNHYTVHGLQSGTKYIFTVKAINQAGSRSSEPG
KLKTNSQPFRLDPKSAHRKLKVSHDNLTVERDESSSKKSHAPERFAGQGSYGVAGNVFIDSGRHYWEVVT
SGSTWYAIGLAYRSAPKHEWIGKNAASWALCRCHNHWAVRHDGKETPIAPAPHLRRVGVLLDYDNGSIAF
YDALSSVHLHTFHAALAQPVCPTFTVWNKCLTIVTGLPIPDHLDCTEQRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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