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Report for CCDS41190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41190.1 Public Mus musculus X Smpx 23 108 98 CCDS HistoryNCBI Gene:66106Re-query CCDS DB by CCDS ID:41190.1Re-query CCDS DB by GeneID:66106See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41190.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038007.9 ENSMUSP00000048522.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038007.9Link to Ensembl Protein Viewer:ENSMUSP00000048522.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000038007Re-query CCDS DB by Protein ID:ENSMUSP00000048522
Original member Current member EBI ENSMUST00000112520.1 ENSMUSP00000108139.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112520.1Link to Ensembl Protein Viewer:ENSMUSP00000108139.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112520Re-query CCDS DB by Protein ID:ENSMUSP00000108139
Original member Current member EBI ENSMUST00000112521.7 ENSMUSP00000108140.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112521.7Link to Ensembl Protein Viewer:ENSMUSP00000108140.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112521Re-query CCDS DB by Protein ID:ENSMUSP00000108140
Original member Current member EBI ENSMUST00000190091.6 ENSMUSP00000140268.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190091.6Link to Ensembl Protein Viewer:ENSMUSP00000140268.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190091Re-query CCDS DB by Protein ID:ENSMUSP00000140268
Original member Current member NCBI NM_001252591.2 NP_001239520.1 Accepted alive Link to Nucleotide Sequence:NM_001252591.2Link to Protein Sequence:NP_001239520.1Re-query CCDS DB by Nucleotide ID:NM_001252591Re-query CCDS DB by Protein ID:NP_001239520Link to BLAST:NP_001239520.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239520.1 85 Q9DC77 85 100% 0 0

Chromosomal Locations for CCDS 41190.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 157702974 157703012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 157714587 157714673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 157720931 157721062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (258 nt):
ATGTCGAAGCAGCCAATTTCCAACGTCAGAGCCATCCAGGCGAATATCAATATTCCAATGGGAGCCTTTC
GTCCGGGAGCTGGGCAGCCTCCCAGAAGGAAAGAGAGTACTCCTGAAACTGAGGAGGGAGCTCCTACCAC
CTCAGAGGAAAAGAAGCCAATTCCTGGAATGAAGAAATTTCCAGGACCTGTTGTCAACTTGTCTGAGATC
CAAAATGTTAAAAGTGAACTGAAATTTGTCCCCAAAGGTGAACAGTAG

Translation (85 aa):
MSKQPISNVRAIQANINIPMGAFRPGAGQPPRRKESTPETEEGAPTTSEEKKPIPGMKKFPGPVVNLSEI
QNVKSELKFVPKGEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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