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Report for CCDS4113.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4113.1 Public Homo sapiens 5 YTHDC2 24 110 108 CCDS HistoryNCBI Gene:64848Re-query CCDS DB by CCDS ID:4113.1Re-query CCDS DB by GeneID:64848See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4113.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000161863.9 ENSP00000161863.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000161863.9Link to Ensembl Protein Viewer:ENSP00000161863.4Re-query CCDS DB by Nucleotide ID:ENST00000161863Re-query CCDS DB by Protein ID:ENSP00000161863
Original member Current member NCBI NM_022828.5 NP_073739.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022828.5Link to Protein Sequence:NP_073739.3Re-query CCDS DB by Nucleotide ID:NM_022828Re-query CCDS DB by Protein ID:NP_073739Link to BLAST:NP_073739.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073739.3 1430 Q9H6S0 1430 100% 0 0

Chromosomal Locations for CCDS 4113.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 113513896 113514082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113515272 113515362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113524981 113525177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113526586 113526785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113532879 113533045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113534305 113534407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113535642 113535798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113539074 113539181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113540968 113541116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113542368 113542503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113548541 113548667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113548955 113549020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113553181 113553359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113553590 113553686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113553767 113553854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113553942 113554022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113556052 113556134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113561080 113561185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113563373 113563492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113563859 113564131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113565893 113566019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113567092 113567297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113567654 113567849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113579586 113579695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113581417 113581709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113584302 113584479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113591041 113591244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113591996 113592178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113593303 113593383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4293 nt):
ATGTCCAGGCCGAGCAGCGTCTCCCCGCGGCAGCCGGCTCCTGGCGGTGGCGGAGGCGGCGGCCCCTCGC
CTTGTGGCCCTGGGGGCGGCGGCCGGGCCAAGGGGCTGAAGGACATTCGCATTGATGAGGAGGTGAAGAT
CGCAGTCAATATCGCGCTGGAGCGCTTCCGATACGGGGACCAGAGAGAAATGGAATTTCCTTCTTCTTTG
ACCAGTACTGAAAGAGCCTTTATTCATCGACTCAGTCAGTCTCTTGGTTTGGTCTCTAAAAGTAAAGGAA
AGGGAGCAAATAGATACCTAACTGTGAAGAAGAAAGATGGATCAGAAACAGCTCATGCAATGATGACCTG
TAATTTGACTCATAATACAAAACATGCTGTTAGGAGCCTAATTCAAAGATTTCCTGTCACCAATAAAGAG
CGTACAGAACTTCTGCCTAAAACAGAAAGAGGAAATGTGTTTGCAGTTGAAGCTGAAAACCGGGAAATGA
GCAAGACAAGTGGGCGACTCAACAATGGCATACCTCAGATTCCAGTGAAAAGAGGAGAATCCGAATTTGA
TTCTTTTAGGCAGTCTTTACCAGTGTTTGAGAAACAGGAAGAAATTGTTAAAATAATTAAGGAAAATAAA
GTAGTTTTGATTGTAGGAGAAACTGGGTCTGGAAAGACCACACAGATTCCTCAGTTCCTTTTAGATGATT
GCTTTAAAAATGGTATCCCCTGCCGTATATTTTGTACTCAACCAAGACGATTGGCAGCTATCGCTGTGGC
TGAAAGAGTTGCCGCAGAGAGACGGGAAAGGATTGGTCAAACAATTGGTTATCAGATCCGATTAGAAAGC
AGGGTTTCTCCAAAGACACTTCTGACATTTTGTACTAATGGGGTATTGCTTCGTACATTGATGGCAGGAG
ATAGTACGTTGTCGACTGTGACACATGTTATCGTGGATGAAGTGCATGAAAGGGATCGATTTAGTGATTT
TTTACTTACAAAGTTAAGAGATTTGTTGCAAAAGCACCCAACTTTGAAACTAATTCTTTCTAGTGCTGCC
TTGGATGTAAATCTCTTTATAAGATATTTTGGAAGTTGTCCAGTGATATATATACAGGGAAGACCATTTG
AAGTAAAAGAAATGTTTCTGGAAGATATTTTAAGAACAACTGGATATACAAACAAAGAAATGTTAAAATA
TAAAAAGGAAAAACAGCAAGAAGAGAAACAACAAACCACACTTACAGAATGGTACTCAGCTCAAGAAAAT
AGTTTCAAGCCTGAATCTCAGAGGCAGAGAACTGTTCTAAATGTGACTGATGAGTATGACTTACTGGATG
ATGGTGGTGATGCTGTCTTCAGTCAGCTGACTGAAAAAGATGTGAATTGCCTTGAACCATGGTTAATAAA
GGAAATGGATGCTTGCCTTTCTGATATATGGCTACATAAAGATATTGATGCCTTTGCTCAGGTCTTTCAT
CTCATTTTAACTGAAAATGTTAGTGTTGATTACAGACATAGTGAAACCAGTGCAACAGCTCTGATGGTTG
CTGCAGGACGTGGCTTTGCAAGTCAAGTAGAACAGTTAATCAGTATGGGAGCCAATGTCCATAGTAAAGC
ATCAAATGGCTGGATGGCATTGGATTGGGCTAAACACTTTGGGCAGACTGAAATTGTGGATCTTCTAGAA
TCTTACAGTGCTACACTGGAATTTGGAAATCTAGATGAAAGTTCTCTGGTTCAAACAAATGGAAGTGACC
TCAGTGCTGAAGACAGAGAGCTCCTGAAAGCTTATCATCATAGTTTCGATGATGAAAAAGTAGACTTGGA
TTTGATCATGCATCTTCTATACAATATCTGCCATAGTTGTGATGCTGGTGCAGTACTAATTTTTCTGCCT
GGATATGACGAAATTGTTGGACTGAGAGATCGCATCCTGTTTGATGACAAGCGGTTTGCTGACAGTACAC
ATAGATACCAAGTCTTTATGCTTCATTCAAATATGCAAACATCCGATCAAAAGAAAGTATTAAAAAACCC
ACCTGCAGGTGTTCGAAAAATAATTCTTTCCACCAATATTGCTGAAACCAGCATCACAGTCAATGATGTT
GTCTTTGTTATTGATTCTGGTAAGGTGAAAGAGAAATCCTTTGATGCTCTGAATTTTGTTACAATGTTAA
AAATGGTATGGATTTCCAAAGCTAGTGCCATACAGCGGAAAGGCAGGGCAGGGCGATGTAGACCTGGAAT
TTGTTTTCGTCTGTTCAGTAGACTCCGATTCCAGAATATGTTGGAATTTCAGACTCCGGAACTTTTGAGA
ATGCCATTACAGGAACTTTGCTTACATACCAAGCTGTTAGCCCCAGTTAATTGTCCCATTGCTGATTTTC
TTATGAAAGCTCCTGAACCTCCACCAGCTTTAATTGTAAGAAATGCTGTACAAATGCTTAAGACAATAGA
TGCAATGGATACATGGGAAGATCTGACTGAACTTGGGTATCATTTGGCTGACTTGCCAGTAGAACCACAT
CTTGGTAAAATGGTCTTGTGTGCTGTTGTTTTAAAGTGTCTGGACCCCATCCTTACAATTGCTTGCACAC
TAGCTTATCGAGATCCTTTTGTACTACCTACTCAGGCCTCTCAAAAACGTGCAGCTATGCTTTGTAGGAA
ACGTTTTACTGCAGGAGCTTTCAGTGACCATATGGCACTTCTCAGAGCATTCCAGGCCTGGCAAAAAGCA
CGAAGTGATGGGTGGGAGCGAGCCTTTTGTGAAAAGAATTTTCTTTCACAGGCTACTATGGAAATAATCA
TAGGCATGAGAACACAGTTGCTTGGTCAACTTAGAGCATCAGGTTTTGTTAGAGCACGAGGTGGTGGTGA
CATTCGGGACGTTAACACAAACTCTGAGAATTGGGCTGTCGTTAAAGCTGCATTGGTGGCAGGCATGTAT
CCTAATTTAGTCCACGTGGACAGAGAGAATCTAGTGTTGACAGGGCCAAAGGAGAAAAAAGTACGATTTC
ATCCTGCTTCAGTTCTCAGTCAGCCTCAATATAAAAAGATTCCTCCAGCCAATGGTCAAGCTGCAGCAAT
TAAGGCACTGCCCACAGATTGGCTTATTTATGATGAAATGACCAGAGCCCATAGAATAGCTAATATTAGA
TGTTGTTCAGCAGTGACGCCTGTCACTATATTGGTATTCTGTGGACCAGCTAGATTGGCAAGTAATGCTC
TTCAGGAACCTTCATCCTTTAGAGTGGATGGCATTCCCAATGACAGTAGTGATAGTGAAATGGAGGACAA
AACTACAGCTAATTTGGCAGCCTTGAAACTTGATGAGTGGCTCCATTTCACACTGGAGCCAGAGGCAGCT
AGTTTATTGCTGCAGCTCAGACAGAAGTGGCATAGCTTATTTTTACGCCGAATGAGAGCTCCATCTAAAC
CTTGGTCTCAAGTTGATGAAGCTACCATAAGAGCAATTATAGCTGTTTTAAGCACTGAAGAACAGTCTGC
AGGTTTACAACAACCATCTGGGATTGGCCAAAGGCCAAGGCCTATGTCTTCAGAAGAGCTTCCTTTGGCC
TCATCTTGGAGGTCAAATAATAGTAGGAAAAGTTCAGCAGATACTGAATTTTCTGATGAGTGTACTACTG
CAGAAAGAGTACTGATGAAATCTCCATCTCCAGCATTACACCCACCTCAGAAGTACAAAGATAGAGGAAT
TTTACATCCTAAACGAGGTACTGAGGACCGATCAGATCAGTCTTCTCTGAAATCTACAGACAGCAGTAGT
TACCCAAGTCCTTGTGCTAGTCCTTCTCCTCCATCCTCAGGAAAGGGCTCAAAATCTCCTTCGCCAAGAC
CAAACATGCCTGTTCGATACTTCATAATGAAGAGTAGCAATTTGAGAAACCTTGAAATTTCTCAACAGAA
GGGTATCTGGTCTACAACTCCTAGTAATGAACGGAAGCTAAATCGAGCCTTTTGGGAAAGCAGCATAGTT
TACTTGGTATTTTCTGTTCAAGGATCTGGACATTTCCAGGGATTTTCTAGGATGTCTTCTGAGATTGGAA
GGGAAAAGAGTCAGGACTGGGGCTCTGCTGGACTAGGAGGAGTATTTAAGGTGGAGTGGATACGAAAAGA
AAGCCTTCCCTTTCAATTTGCACACCATTTACTCAATCCATGGAATGACAACAAGAAAGTGCAGATAAGC
AGGGATGGGCAGGAACTAGAACCTCTGGTTGGTGAACAGTTGCTCCAGTTATGGGAACGTCTTCCCTTGG
GAGAAAAAAACACAACTGATTGA

Translation (1430 aa):
MSRPSSVSPRQPAPGGGGGGGPSPCGPGGGGRAKGLKDIRIDEEVKIAVNIALERFRYGDQREMEFPSSL
TSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCNLTHNTKHAVRSLIQRFPVTNKE
RTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVKRGESEFDSFRQSLPVFEKQEEIVKIIKENK
VVLIVGETGSGKTTQIPQFLLDDCFKNGIPCRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLES
RVSPKTLLTFCTNGVLLRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAA
LDVNLFIRYFGSCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQQEEKQQTTLTEWYSAQEN
SFKPESQRQRTVLNVTDEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHKDIDAFAQVFH
LILTENVSVDYRHSETSATALMVAAGRGFASQVEQLISMGANVHSKASNGWMALDWAKHFGQTEIVDLLE
SYSATLEFGNLDESSLVQTNGSDLSAEDRELLKAYHHSFDDEKVDLDLIMHLLYNICHSCDAGAVLIFLP
GYDEIVGLRDRILFDDKRFADSTHRYQVFMLHSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDV
VFVIDSGKVKEKSFDALNFVTMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLR
MPLQELCLHTKLLAPVNCPIADFLMKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPH
LGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGAFSDHMALLRAFQAWQKA
RSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNTNSENWAVVKAALVAGMY
PNLVHVDRENLVLTGPKEKKVRFHPASVLSQPQYKKIPPANGQAAAIKALPTDWLIYDEMTRAHRIANIR
CCSAVTPVTILVFCGPARLASNALQEPSSFRVDGIPNDSSDSEMEDKTTANLAALKLDEWLHFTLEPEAA
SLLLQLRQKWHSLFLRRMRAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLA
SSWRSNNSRKSSADTEFSDECTTAERVLMKSPSPALHPPQKYKDRGILHPKRGTEDRSDQSSLKSTDSSS
YPSPCASPSPPSSGKGSKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIV
YLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQIS
RDGQELEPLVGEQLLQLWERLPLGEKNTTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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