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Report for CCDS41071.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41071.1 Public Mus musculus X Pja1 23 108 98 CCDS HistoryNCBI Gene:18744Re-query CCDS DB by CCDS ID:41071.1Re-query CCDS DB by GeneID:18744See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41071.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113797.3 ENSMUSP00000109428.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113797.3Link to Ensembl Protein Viewer:ENSMUSP00000109428.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113797Re-query CCDS DB by Protein ID:ENSMUSP00000109428
Original member NCBI NM_008853.3 NP_032879.2 Updated not alive Link to Nucleotide Sequence:NM_008853.3Link to Protein Sequence:NP_032879.2Re-query CCDS DB by Nucleotide ID:NM_008853Re-query CCDS DB by Protein ID:NP_032879
Current member NCBI NM_008853.4 NP_032879.2 Accepted alive Link to Nucleotide Sequence:NM_008853.4Link to Protein Sequence:NP_032879.2Re-query CCDS DB by Nucleotide ID:NM_008853Re-query CCDS DB by Protein ID:NP_032879Link to BLAST:NP_032879.2

Chromosomal Locations for CCDS 41071.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 99466565 99467573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 99468123 99468301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGAGCCACCAGGAAAGGATTGCCAGCCAGAGGAGGACAACAGCCGAAGTCCCAATGCACAGATCAACTG
CCAATCAAAGCAAGAGGAGCCGGTCACCATTTGCCAGCACACGTCGTCGCTGGGATGACAGCGAGAGCTC
GGGAGCCAGCCTGGCTGTTGAGAGTGAGGATTATTCCAGGTGGCGGGATGCTGCCGATGCTGAGGAGGCT
CATGCCGAGGGCCTAGCCAGAAGAGGCCGAGGTGAGGCTGCCAGCAGCTCAGAGCCAAGGTATGCTGAAG
ACCAGGATGCCAGGAGTGAACAAGCGAAGGCAGACAAAGTGCCAAGACGGCGGCGAACCATGGCAGACCC
TGACTTCTGGGCATACACCGACGATTACTACCGATACTACGAGGAAGATTCTGACAGCGACAAAGAGTGG
ATGGCTGCCCTGCGCAGGAAGTACCGAAGCCGAGAGCAACCCCAGTCCTCCAGCGGAGAAAGCTGGGAGC
TTCTGCCAGGAAAGGAAGAACTGGAACGTCAGCAAGCCGGAGCTGGGAGCCTCGCCAGTGCTGGCAGCAA
TGGCAGTGGTTATCCTGAAGAAGTACAAGACCCATCTCTTCAGGAGGAAGAACAGGCCTCTCTGGAAGAA
GGAGAAATCCCTTGGCTTCGCTACAATGAGAATGAAAGCAGCAGCGAGGGTGATAATGAGTCTACCCATG
AGCTCATACAGCCTGGGATGTTCATGCTGGATGGAAACAACAACCTGGAAGATGACTCCAGCGTGAGCGA
AGACCTCGAAGTGGACTGGAGCCTGTTTGATGGGTTTGCCGATGGCTTGGGAGTGGCCGAAGCCATCTCC
TACGTGGATCCTCAGTTCCTCACCTACATGGCTCTGGAAGAGCGTCTGGCCCAGGCAATGGAGACGGCCC
TGGCACACTTGGAGTCTCTCGCCGTTGATGTCGAAGTGGCCAACCCACCAGCAAGCAAGGAGAGCATTGA
TGCCCTTCCTGAGATCCTGGTCACCGAAGATCATGGTGCAGTGGGCCAGGAAATGTGCTGTCCTATCTGC
TGCAGCGAATATGTGAAGGGGGAGGTGGCAACTGAGCTACCATGCCACCACTATTTCCACAAGCCCTGCG
TGTCCATCTGGCTTCAGAAGTCTGGCACCTGCCCAGTGTGCCGCTGCATGTTCCCTCCCCCGCTCTAA

Translation (395 aa):
MSHQERIASQRRTTAEVPMHRSTANQSKRSRSPFASTRRRWDDSESSGASLAVESEDYSRWRDAADAEEA
HAEGLARRGRGEAASSSEPRYAEDQDARSEQAKADKVPRRRRTMADPDFWAYTDDYYRYYEEDSDSDKEW
MAALRRKYRSREQPQSSSGESWELLPGKEELERQQAGAGSLASAGSNGSGYPEEVQDPSLQEEEQASLEE
GEIPWLRYNENESSSEGDNESTHELIQPGMFMLDGNNNLEDDSSVSEDLEVDWSLFDGFADGLGVAEAIS
YVDPQFLTYMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCCPIC
CSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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