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Report for CCDS40839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40839.1 Public Mus musculus X Akap4 23 108 98 CCDS HistoryNCBI Gene:11643Re-query CCDS DB by CCDS ID:40839.1Re-query CCDS DB by GeneID:11643See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40839.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115750.7 ENSMUSP00000111416.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115750.7Link to Ensembl Protein Viewer:ENSMUSP00000111416.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115750Re-query CCDS DB by Protein ID:ENSMUSP00000111416
Original member Current member EBI ENSMUST00000115751.2 ENSMUSP00000111417.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115751.2Link to Ensembl Protein Viewer:ENSMUSP00000111417.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115751Re-query CCDS DB by Protein ID:ENSMUSP00000111417
Original member Current member NCBI NM_001042542.2 NP_001036007.1 Accepted alive Link to Nucleotide Sequence:NM_001042542.2Link to Protein Sequence:NP_001036007.1Re-query CCDS DB by Nucleotide ID:NM_001042542Re-query CCDS DB by Protein ID:NP_001036007Link to BLAST:NP_001036007.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036007.1 840 Q60662-2 840 100% 0 0

Chromosomal Locations for CCDS 40839.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7070431 7070526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7073149 7073199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7073635 7073736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7075709 7077826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7078264 7078419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2523 nt):
ATGTCTGACGATATTGACTGGTTACACAGCCGCAGAGGCGTGTGCAAGGTAGATCTTTACAGTCCAAAAG
GACAACAAGATCAGGACCGAAAAGTGATATGCTTTGTGGATGTGTCTACCTTGAATGTGGAAGATAAAGA
TTCCAAGGGTGCTGCTGGTTCCAGGTCAGAAGGCGAGTTAAATCTGGAGACTCTGGAAGAAAAAGAGATT
ATCGTAATCAAGGACACTGAAAAACAAGACCAGTCTAAGACGGAGGGATCTGTGTGCCTTTTCAAACAAG
CTCCCTCTGATCCTATAAGTGTCCTCAACTGGCTCCTCAATGATCTCCAGAAGTATGCCTTGGGTTTCCA
ACATGCATTAAGCCCCTCAGCCTCTAGCTGTAAACATAAAGTGGGAGACCTAGAGGGTGACTATAGCAAA
ATACCATCTGAGAACTGCTACAGTGTGTACGCTGATCAAGTAAACTTTGATTATTTGAACAAAGGACCTC
AAAACCTTCGCCTAGAAATGGCGGCATCCAAAAACACCAACAATAACCAAAGTCCCTCAAATCCTGCAAC
CAAATCTCCTAGCAATCAGAGGTCAGTTGCCACTCCTGAGGGAGAATGTTCTATGGACGACCTTTCCTTC
TATGTCAACCGATTGTCATCTCTGGTAATCCAAATGGCCCGTAAGGAAATCAAGGACAAATTGGAAGGTG
GAAGCAAATGTCTCCATCATTCCATGTATACATCAGGAGATAAAGGGAAAACCAGCCCCCGGAGTGCTGT
CAGCAAAATTGCTTCGGAGATGGCCCATGAAGCTGTTGAACTGACCTCATCAGAAATGCGTGGCAATGGA
GAGGATTGCAGGGATGGCCGGAAAACCTTTTTGTATAGTGAAATGTGTAACAAGAACAAGTGTGGCGAAA
AGCAGCAGATGTGCCCAAAAGACAGCAAAGAATTTGCGGATTCCATCAGCAAGGGGCTTATGGTTTATGC
AAATCAAGTAGCATCTGACATGATGGTCTCTGTTATGAAAACTTTGAAAGTACACAGCTGTGGGAAGCCA
ATTCCGGCTTGTGTGGTCCTGAAGAGGGTACTATTGAAGCACACCAAGGAAATTGTATCTGATCTGATTG
ATTCATGTATGAAAAACTTGCATAACATAACAGGAGTCCTGATGACAGACTCAGACTTCGTTTCTGCTGT
CAAGAGGAATCTTTTCAATCATGGTAAACAAAATGCAGCGGACATCATGGAGGCCATGCTAAAGCGTCTG
GTCAGTGCTCTTCTTGGTGAGAAGAAGGAGACTAAGTCTCAAAGTCTGGCCTATGCAACCTTAAAAGCTG
GAACTAATGATCCGAAATGCAAGAATCAGAGCCTTGAGTTCTCAGCTATGAAAGCTGAAATGAAAGGAAA
AGATAAATGCAAATCCAAAGCAGATCCATGCTGCAAATCGTTGACAAGTGCTGAGAGAGTCAGCGAGCAT
ATCCTCAAAGAGAGCCTTACTATGTGGAACAACCAGAAGCAAGGAAACCAAGGCAAAGTGACTAACAAAG
TTTGCTGCACCAGTAAAGATGAGAAGAGAGAAAAGATCAGTCCTTCCACAGATTCACTGGCCAAGGATCT
AATTGTCTCTGCCCTTATGCTCATTCAATACCATCTGACCCAACAAGCCAAGGGCAAAGATCCATGTGAA
GAGGAGTGCCCTGGTTCCTCCATGGGGTATATGTCCCAAAGTGCACAATACGAAAAATGTGGAGGTGGCC
AAAGTTCTAAATCACTTTCAATGAAGCATTTTGAAACTCGTGGAGCTCCTGGACCATCTACATGTATGAA
GGAAAATCAACTGGAGTCCCAGAAGATGGATATGTCAAACATGGTTCTGTCCCTGATTCAGAAACTCCTG
AGTGAGAGCCCTTTCAGTTGCGATGAACTAACTGAAAGTGACAATAAGCGTTGTTGTGATCCTAGATCAA
GCAAAGCAGCTCCCATGGCCAAGAGACCTGAAGAGCAATGCCAAGACAATGCAGAACTAGACTTCATCAG
TGGGATGAAGCAAATGAACCGCCAGTTTATAGATCAGCTGGTAGAATCCGTGATGAAACTCTGCCTGATC
ATGGCTAAGTACAGCAACAATGGAGCAGCCCTGGCTGAGCTGGAAGAACAAGCAGCCCTGGTAGGCAGTG
GCTCCAGATGTGGCCGTGATGCTATGATGTCACAAAATTATTCTGAAACTCCTGGCCCTGAAGTTATTGT
CAACAATCAGTGCTCTACAACTAACTTGCAGAAGCAGCTGCAGGCTGTCCTGCAATGGATTGCAGCCTCT
CAATTCAATGTGCCCATGCTCTACTTCATGGGAGACGATGATGGACAACTAGAGAAGCTCCCTGAAGTTT
CAGCTAAGGCTGCAGAGAAGGGGTACAGTGTAGGAGATCTTCTTCAGGAGGTCATGAAGTTTGCCAAAGA
ACGACAACTGGATGAAGCCGTGGGCAACATGGCTAGAAAGCAGCTGCTAGACTGGCTTCTCGCTAACCTG
TAA

Translation (840 aa):
MSDDIDWLHSRRGVCKVDLYSPKGQQDQDRKVICFVDVSTLNVEDKDSKGAAGSRSEGELNLETLEEKEI
IVIKDTEKQDQSKTEGSVCLFKQAPSDPISVLNWLLNDLQKYALGFQHALSPSASSCKHKVGDLEGDYSK
IPSENCYSVYADQVNFDYLNKGPQNLRLEMAASKNTNNNQSPSNPATKSPSNQRSVATPEGECSMDDLSF
YVNRLSSLVIQMARKEIKDKLEGGSKCLHHSMYTSGDKGKTSPRSAVSKIASEMAHEAVELTSSEMRGNG
EDCRDGRKTFLYSEMCNKNKCGEKQQMCPKDSKEFADSISKGLMVYANQVASDMMVSVMKTLKVHSCGKP
IPACVVLKRVLLKHTKEIVSDLIDSCMKNLHNITGVLMTDSDFVSAVKRNLFNHGKQNAADIMEAMLKRL
VSALLGEKKETKSQSLAYATLKAGTNDPKCKNQSLEFSAMKAEMKGKDKCKSKADPCCKSLTSAERVSEH
ILKESLTMWNNQKQGNQGKVTNKVCCTSKDEKREKISPSTDSLAKDLIVSALMLIQYHLTQQAKGKDPCE
EECPGSSMGYMSQSAQYEKCGGGQSSKSLSMKHFETRGAPGPSTCMKENQLESQKMDMSNMVLSLIQKLL
SESPFSCDELTESDNKRCCDPRSSKAAPMAKRPEEQCQDNAELDFISGMKQMNRQFIDQLVESVMKLCLI
MAKYSNNGAALAELEEQAALVGSGSRCGRDAMMSQNYSETPGPEVIVNNQCSTTNLQKQLQAVLQWIAAS
QFNVPMLYFMGDDDGQLEKLPEVSAKAAEKGYSVGDLLQEVMKFAKERQLDEAVGNMARKQLLDWLLANL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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