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Report for CCDS40780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40780.1 Public Mus musculus 9 Ptpn23 23 108 98 CCDS HistoryNCBI Gene:104831Re-query CCDS DB by CCDS ID:40780.1Re-query CCDS DB by GeneID:104831See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40780.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040021.11 ENSMUSP00000039580.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040021.11Link to Ensembl Protein Viewer:ENSMUSP00000039580.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040021Re-query CCDS DB by Protein ID:ENSMUSP00000039580
Original member Current member NCBI NM_001081043.1 NP_001074512.1 Accepted alive Link to Nucleotide Sequence:NM_001081043.1Link to Protein Sequence:NP_001074512.1Re-query CCDS DB by Nucleotide ID:NM_001081043Re-query CCDS DB by Protein ID:NP_001074512Link to BLAST:NP_001074512.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074512.1 1692 Q6PB44-1 1692 100% 0 0

Chromosomal Locations for CCDS 40780.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 110385253 110385732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110385814 110385927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110386018 110386156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110386245 110386349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110386454 110386638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110386731 110388651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110388741 110388920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110389012 110389163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110389241 110389395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110389473 110389790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110390043 110390188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110390470 110390535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110390630 110390744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110390851 110390930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110391044 110391102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110391209 110391265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110391634 110391681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110391767 110391898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110391982 110392062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110392485 110392616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110392703 110392752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110393371 110393447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110393701 110393828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110398121 110398195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 110408034 110408117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5079 nt):
ATGGAGGCCGTGCCCCGGATGCCCATGATCTGGCTGGACCTGAAGGAGGCCGGTGACTTTCACTTCCAGT
CTGCGGTGAAGAAGTTTGTCCTGAAGAATTATGGAGAGAACCCAGAAGCCTACAACGAGGAACTAAAGAA
GCTGGAATTACTCAGACAGAATGCTATTCGCGTTGCCCGGGACTTTGAGGGCTGCAGTGTTCTTCGAAAG
TACCTTGGCCAGCTACACTACCTACAGAGTCGGGTGCCCATGGGCTCAGGCCAGGAGGCTGCTGTAGCTG
TCACCTGGACTGAGATCTTCTCGGGCAAGTCTGTGTCCCATGAAGACATCAAGTACGAGCAGGCCTGTAT
TCTCTACAACCTCGGTGCACTGCACTCCATGCTGGGGGCTATGGACAAGCGGGTGTCTGAGGAGGGCATG
AAAGTCTCCTGCACCCACTTCCAGTGTGCAGCAGGCGCCTTTGCCTACCTGCGTGAACACTTCCCACAGG
CCTTCAGTGTGGACATGAGTCGCCAGATCCTTACGCTCAATGTCAACCTCATGCTGGGCCAGGCTCAGGA
GTGCCTGTTGGAGAAGTCCATGTTGGACAACCGGAAGAGCTTTCTAGTGGCCCGCATCAGCGCACAGGTG
GTAGATTACTATAAGGAGGCATGCCGGGCCTTGGAAAACCCTGATACTGCCTCCCTGCTGGGCCGTATCC
AGAAAGACTGGAAGAAACTTGTCCAAATGAAGATCTACTACTTTGCGGCTGTGGCTCATCTACACATGGG
GAAGCAGGCTGAGGAGCAACAGAAATTTGGGGAACGGGTGGCCTACTTCCAGAGTGCCCTGGACAAGCTT
AATGAAGCCATCAAGTTGGCCAAGGGCCAGCCCGACACTGTGCAAGATGCACTTCGCTTTGCTATGGATG
TCATCGGGGGCAAATATAATTCTGCCAAGAAGGACAATGACTTTATCTACCATGAGGCTGTGCCAGCACT
GGATACACTCCAGCCTGTGAAAGGAGCTCCCTTGGTGAAGCCCTTGCCAGTAAACCCCACAGACCCAGCT
GTTACAGGTCCTGACATCTTTGCCAAGTTGGTGCCCATGGCTGCCCATGAGGCCTCATCACTGTACAGTG
AGGAGAAGGCCAAACTGCTTCGGGAGATGCTGGCCAAAATTGAAGATAAGAATGAGGTCCTAGATCAGTT
CATGGACTCCATGCAGCTGGACCCTGAGACAGTGGACAACTTGGATGCCTACAACCATATCCCCCCCCAG
CTCATGGAGAAGTGTGCGGCACTCAGCGTCCGGCCTGACACTGTCAAGAACCTTGTCCAGTCTATGCAGG
TGCTGTCAGGGGTGTTCACGGATGTGGAGGCCTCCCTGAAGGACATCAGGGATCTACTGGAGGAAGATGA
GCTGCAAGAGCAGAAATTGCAGGAGACCCTGGGCCAGGCCGGGGCTGGCCCTGGCCCCTCTGTTGCCAAG
GCTGAGCTTGCAGAGGTGAGGCGAGAATGGGCCAAGTACATGGAAGTGCATGAAAAGGCTTCCTTCACCA
ACAGTGAGCTGCATCGTGCTATGAACCTGCATGTTGGTAACTTGCGCCTGCTCAGTGGACCACTGGACCA
GGTGCGGGCTGCCCTACCCACACCAGCCCTCACCCCAGAGGACAAAGCCGTGCTGCAAAACCTAAAGCGC
ATCCTCGCCAAGGTGCAGGAGATGCGGGACCAGCGTGTGTCCTTGGAACAGCAGCTCCGAGAGCTGATCC
AGAAGGATGACATCACTGCCTCTCTGGTCACCACTGACCACTCAGAGATGAAGAAACTGTTTGAGGAGCA
GCTGAAGAAGTATGACCAGCTGAAGGTCTACCTGGAGCAGAACCTGGCCGCCCAGGACAATGTCCTCCGT
GCCCTGACTGAGGCCAACGTGCAGTATGCAGCCGTGCGGCGGGTGCTTAGTGAGCTGGACCAAAAGTGGA
ACTCCACACTACAGACCCTGGTAGCATCCTATGAGGCCTATGAGGACCTGATGAAGAAGTCCCAAGAAGG
CAAGGACTTTTATGCAGACTTGGAAAGCAAGGTAGCTACCCTTCTGGAACGGGCACAATCCATCTGTCGT
GCCCAAGAGGCCGCTCGCCAGCAGCTCCTGGACAGAGAGCTGAAGAAGAAGGCACCACCACCTCGGCCTA
CAGCCCCAAAGCCATTGCTGTCCCGCCGTGAGGAGGGGGAGGCAGTGGAGGCTGGAGACACACCTGAGGA
GCTGCGCAGCTTGCCCCCTGACATGATGGTTGGCCCACGGCTACCTGACCCATTCCTAGGAACTACTGCC
CCTCTCCACTTTTCTCCTGGCCCCTTCCCTAGTTCCACAGGCCCAGCAACCCACTATCTCTCAGGACCCT
TACCCCCTGGAACTTATTCAGGCCCCACTCAACTGATGCAGCCTAGGGCTGCAGTTCCCATGGCACCTGC
AACGGTCCTCTACCCAGCCCCTGCCTATACATCGGAGTTGGGCCTCGTACCCAGATCCTCTCCCCAGCAT
GGAATTGTAAGCAGTCCCTATGCAGGGGTAGGGCCACCCCAACCAGTTGTAGGTCTTCCCTCTGCTCCAC
CTCCCCAGCTCTCAGGACCCGAGTTAGCCATGACAGTTCGGCCAGCTACCACCACAGTAGATAGTGTCCA
AGCCCCTATCTCTAGCCACACGGCACCACGGCCAAACCCTACCCCTGCTCTTCCCCAGCCCTGCTTTCCA
GTGCCTCAGCCTGTACCTCAATCTGTTCCCCAACCACAGCCTCTGCCTGTACCCTATACTTATTCTATAG
GGACCAAGCAGCCTCTGCCTGCACCCTATACTTACTCTATAGGGACCAAGCAGCACCTCACTGGCCCTCT
ACCACAGCATCAGTTTCCTCCTGGGATCCCCACAGGCTTTCCAGTCCCCAGGACTGGGCCCCAGGCCCAG
GCCCAGCCCCAACCCCAGCCCCAGCCCCAGCCTCAGCCTCAGCCCCAGCCCCAGCCCCAGCCCCAGCCCC
AGTCCCAGTCCCAGCCCCAGCCCCAGCCCCAGCCTCAGCCCCAACGGCCAGCATTTGGGCCACAACCCAC
ACAACAGCCCCTTCCATTCCAGCATCCACATCTCTTCCCATCTCAGGCCCCAGGGATTCTTCCACCACCA
CCACCAACACCCTACCATTTTACTCCTCAGCCTGGTGTCTTGGGACAACCACCACCCACCCTACACACCC
AGCTCTATCCAGGCCCATCTCAAGACCCTCTTCCCCCACATTCAGGGGCTCTGCCTTTCCCCAGCCCTGG
GCCCCCTCATCCTCACCCCACCCTGGCATATGGCCCTGCCCCTTCCCCTAGGCCCCTTGGTCCTCAGGCA
ACCCCTGTCTCCATTCGAGGCCCCCCACCAGCCAGTCAGCCCACCCCTAGTCCACACTTGGTGCCTTCAC
CTGCCCCATCACCAGGGCCTGGCCCAGTACCTTCAAGACCTCCAACAGCCGAGCCACCACCTTGTTTGCG
CCGAGGTGCTGCAGCTGCAGACCTTCTGTCTTCTAGCCCTGAGAGCCAGCATGGAGGTACCCAGCCTCCT
GGGGGTGGGCAGCCCTTGCTACAGCCTACCAAGGTAGATGCAGCTGAGGGCCGTCGGCCACAGGCCCTGC
GGCTAATTGAGCAGGACCCCTATGAACATCCCGAGAGGCTGCAGCAGTTGCAGCAGGAGCTGGAGGCCTT
TCGGGGCCAGCTGGGGGATGCAGGAGCACTGGATGCCATCTGGAGAGAGTTGCAAGAGGCACAGGAACAC
GATGCCCGAGGTCGATCCATTGCCATTGCCCGCTGCTACTCCCTGAAGAACCGGCACCAGGATGTCATGC
CGTATGACAGCAACCGTGTGGTGCTGCGCTCAGGCAAAGATGATTATATTAATGCTAGCTGTGTGGAGGG
GCTCTCGCCATACTGTCCACCCTTAGTGGCCACCCAGGCTCCGCTGCCTGGCACAGCTGCAGATTTCTGG
CTCATGGTGCATGAACAGAAAGTGTCAGTCATTGTCATGCTGGTGTCTGAGGCTGAGATGGAAAAGCAAA
AGGTGGCGCGTTACTTCCCCACAGAGAGGGGCCAGCCCATGGTGCATGGAGCCCTGAGCGTGGCACTGAG
CAGTATTCGTACTACTGAGACCCATGTGGAGCGAGTGCTGAGTCTGCAGTTCCGGGATCAGAGCCTCAAG
CGCTCTCTTGTGCACCTCCATTTCCCTACTTGGCCTGAGTTAGGCCTGCCAGACAGCCCTGGCAATCTGC
TGCGCTTCATCCAGGAGGTGCATGCACATTATTTGCACCAGCGACCCCTGCACACACCTATTGTCGTACA
CTGCAGCTCTGGGGTGGGCCGCACAGGAGCCTTCGCGTTGCTCTATGCAGCCGTGCAGGAGGTGGAGGCT
GGGAATGGGATTCCAGAGCTGCCCCAGCTGGTGAGGCGGATGCGGCAGCAGAGGAAACACATGCTGCAGG
AAAAACTTCACCTCAAGTTCTGCCATGAGGCGTTGGTGAGACATGTGGAGCAGGTCCTACAGCGCCATGG
TGTGCCTCCTCCTGGCAAGCCTGTGGCCAGTGTGAACATCAGCCAGAAGAACCACCTTCCTCAGGACTCC
CAGGATCTGGTCCTTGGTGGAGACGTGCCCATCAGCTCCATTCAGGCTACCATTGCCAAGCTCAGCATCC
GGCCCCTAGGTGGCTTGGATTCCCCAGCTGCCAGCCTCCCAGGCCTTGTAGAACCCCCAGGTCTTCCACC
AGCTAGCCTTCCAGAGTCTACCCCTGTCCCATCTTCCTCGCCTCCCCCACTCTCTTCACCTCTGCCTGAA
GCCCCCCAGCCAGAGGAGGAGCCGTCAGTGCCTGAAGCCCCCAGCTTAGGGCCCCCCTCGTCATCCCTGG
AGCTGTTGGCCTCTCTGACTCCAGAAGCATTTTCACTGGACAGTTCTTTACGGGGAAAGCAGCGGATGAG
CAAGCAGAACTTTCTGCAGGCCCACAACGGGCAGGGTCTAAGGGCTGCCCAGCCTACGGATGACCCCCTC
AGCCTCCTGGATCCACTCTGGACACTCAACAAGACCTGA

Translation (1692 aa):
MEAVPRMPMIWLDLKEAGDFHFQSAVKKFVLKNYGENPEAYNEELKKLELLRQNAIRVARDFEGCSVLRK
YLGQLHYLQSRVPMGSGQEAAVAVTWTEIFSGKSVSHEDIKYEQACILYNLGALHSMLGAMDKRVSEEGM
KVSCTHFQCAAGAFAYLREHFPQAFSVDMSRQILTLNVNLMLGQAQECLLEKSMLDNRKSFLVARISAQV
VDYYKEACRALENPDTASLLGRIQKDWKKLVQMKIYYFAAVAHLHMGKQAEEQQKFGERVAYFQSALDKL
NEAIKLAKGQPDTVQDALRFAMDVIGGKYNSAKKDNDFIYHEAVPALDTLQPVKGAPLVKPLPVNPTDPA
VTGPDIFAKLVPMAAHEASSLYSEEKAKLLREMLAKIEDKNEVLDQFMDSMQLDPETVDNLDAYNHIPPQ
LMEKCAALSVRPDTVKNLVQSMQVLSGVFTDVEASLKDIRDLLEEDELQEQKLQETLGQAGAGPGPSVAK
AELAEVRREWAKYMEVHEKASFTNSELHRAMNLHVGNLRLLSGPLDQVRAALPTPALTPEDKAVLQNLKR
ILAKVQEMRDQRVSLEQQLRELIQKDDITASLVTTDHSEMKKLFEEQLKKYDQLKVYLEQNLAAQDNVLR
ALTEANVQYAAVRRVLSELDQKWNSTLQTLVASYEAYEDLMKKSQEGKDFYADLESKVATLLERAQSICR
AQEAARQQLLDRELKKKAPPPRPTAPKPLLSRREEGEAVEAGDTPEELRSLPPDMMVGPRLPDPFLGTTA
PLHFSPGPFPSSTGPATHYLSGPLPPGTYSGPTQLMQPRAAVPMAPATVLYPAPAYTSELGLVPRSSPQH
GIVSSPYAGVGPPQPVVGLPSAPPPQLSGPELAMTVRPATTTVDSVQAPISSHTAPRPNPTPALPQPCFP
VPQPVPQSVPQPQPLPVPYTYSIGTKQPLPAPYTYSIGTKQHLTGPLPQHQFPPGIPTGFPVPRTGPQAQ
AQPQPQPQPQPQPQPQPQPQPQPQSQSQPQPQPQPQPQRPAFGPQPTQQPLPFQHPHLFPSQAPGILPPP
PPTPYHFTPQPGVLGQPPPTLHTQLYPGPSQDPLPPHSGALPFPSPGPPHPHPTLAYGPAPSPRPLGPQA
TPVSIRGPPPASQPTPSPHLVPSPAPSPGPGPVPSRPPTAEPPPCLRRGAAAADLLSSSPESQHGGTQPP
GGGQPLLQPTKVDAAEGRRPQALRLIEQDPYEHPERLQQLQQELEAFRGQLGDAGALDAIWRELQEAQEH
DARGRSIAIARCYSLKNRHQDVMPYDSNRVVLRSGKDDYINASCVEGLSPYCPPLVATQAPLPGTAADFW
LMVHEQKVSVIVMLVSEAEMEKQKVARYFPTERGQPMVHGALSVALSSIRTTETHVERVLSLQFRDQSLK
RSLVHLHFPTWPELGLPDSPGNLLRFIQEVHAHYLHQRPLHTPIVVHCSSGVGRTGAFALLYAAVQEVEA
GNGIPELPQLVRRMRQQRKHMLQEKLHLKFCHEALVRHVEQVLQRHGVPPPGKPVASVNISQKNHLPQDS
QDLVLGGDVPISSIQATIAKLSIRPLGGLDSPAASLPGLVEPPGLPPASLPESTPVPSSSPPPLSSPLPE
APQPEEEPSVPEAPSLGPPSSSLELLASLTPEAFSLDSSLRGKQRMSKQNFLQAHNGQGLRAAQPTDDPL
SLLDPLWTLNKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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