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Report for CCDS40712.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40712.1 Public Mus musculus 9 Ibtk 23 108 98 CCDS HistoryNCBI Gene:108837Re-query CCDS DB by CCDS ID:40712.1Re-query CCDS DB by GeneID:108837See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40712.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039213.14 ENSMUSP00000041145.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039213.14Link to Ensembl Protein Viewer:ENSMUSP00000041145.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000039213Re-query CCDS DB by Protein ID:ENSMUSP00000041145
Original member Current member NCBI NM_001081282.2 NP_001074751.1 Accepted alive Link to Nucleotide Sequence:NM_001081282.2Link to Protein Sequence:NP_001074751.1Re-query CCDS DB by Nucleotide ID:NM_001081282Re-query CCDS DB by Protein ID:NP_001074751Link to BLAST:NP_001074751.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074751.1 1352 Q6ZPR6-1 1352 100% 0 0

Chromosomal Locations for CCDS 40712.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 85688383 85688514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85690209 85690341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85690694 85690765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85697119 85697265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85703015 85703158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85703651 85703743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85706444 85706604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85708024 85708172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85710376 85710488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85713597 85713718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85714188 85714248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85715299 85715416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85717551 85717652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85718361 85718457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85718895 85718932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85719013 85719095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85719863 85719949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85720744 85721346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85722275 85722452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85724047 85724224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85726610 85726733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85728406 85728586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85728676 85728793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85731084 85731254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85732631 85732741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85734975 85735099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85737468 85737564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85743375 85743695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4059 nt):
ATGGATGCTGCCACCCCCGACTGCACGTCAAAATGCAGATCCCTGAAGCATGCGCTGGATGTCCTTTCTG
TGGTGACAAAGGGGAGTGAGAGCCAGATCAAGTCCTTCCTCGCCAGGTACTGCTACAATGCTGCAACTGT
CAAGGATGCCTTTGGCAGGAACGCCGGCCACCTGGCTTCCTCCTGCGGGAAGAAAGGAGTGTTGGACTGG
CTGATTGAGAAAGGAGTGGACTTGCTGGTGAAAGACAAGGAGTCCGGCTGGACAGCACTGCACAGAAGCG
TTTTTTATGGACATATCGATTGTGTTTGGTCTCTGTTGAAGCATGGTGTTAGCTTGTATATGCAAGATAA
AGAAGGATTGTCACCTTTGGATCTTCTTATGAAGGACAGGCCAACTCATGTTGTATTTAAGGACACTGAT
CCCACAGAAGTCTATACTTGGGGAGATAACACAAACTTCACTCTGGGCCACGGAAGCCAGAATAGCAAAC
ATCACCCCGAGCTGCTGGACCTGTTCTCCAGGAGTGGGGTTTATGTCAAGCAGGTGGTGCTTTGCAAATT
TCATTCGGTGTTTCTGTCCCAGAAAGGGCAGGTTTACACCTGTGGCCATGGTCGCGGAGGACGGTTAGGC
CATGGAGATGAACAGACATGCTTGGTTCCCAGGCTTGTGGAAGGACTGTCTGGTCACAATTGTTCGCAAG
TGGCAGCTGCTAAGGATCACACTGTTGTGTTAACTGATGATGGATGTGTCTATACATTTGGTCTCAACAT
GTTTCACCAATTAGGAATTATTCCTCCACCTGCTAGTTGTAATGTACCCAGACAGATACAGGCAAAATAT
CTGAAAGGAAGGACTATCATTGGAGTAGCAGCGGGCAGGTTTCATACGGTGCTGTGGACTCGAGAAGCCG
TTTACACACTGGGACTGAATGGTGGACAGTTGGGTCACTTACTGGATCCCAATGGTGAAAAGTGTGTCAC
AACCCCTCGCCAAGTCTCTGCCCTTCATCACAAGGATATCGCTGTGTCTTTGGTAGCTGCAAGTGATGGT
GCCACAGTCTGTGTCACCACAAGGGGAGACATTTACTTACTTGCAGACTATCAGTGCAAGAAGATGGCAA
CTAAACAACTGAACTTGAAAAAGGTTCTTGTCTCTGGAGGTTGTATGGAATACAAGGTTGATCCTGAACA
TTTGACAGAAAATGGAGGTCAGAAAATATGTGTCCTCGCTATGGATGGAGCTGGAAGGGTGTTTTGCTGG
AGATCAATCAGCAGTTCTCTGAAGCAGTGCCGATGGGCCTATCCTCGCCAGGTGTCAATCTCCGATATTG
CTTTAAATAGAAATGAAATTCTGTTTGTCACACAGGATGGGGAAGGATTTAAAGGGAAATGGTTTGAAGA
CAAAAGAAAGAATTCTGAAAAGAAAGCAGACATTTTACCAAACCTCCATCATTCCTCATCAGATGTGTCT
TGTGTCCCTGATACAAATAGTGTGTATGAAAGAATTCGACTTGAGAAACTTCCTTTTGCCCATAGAGCTG
TTAGTGTCAGCACAGATCCAAGTGGGTGCAACTTTGCAATCCTACAGTCAGACCCTAAAACAAGCCTTTA
TGAGATTCCAGTTGTGTCTTCATCATCTTTTTTTGAAGAATTTGGCAAGCTCCTGAGGGAGACAGATGAA
ATGGACAGCTTCCACGATGTGACCTTTCAAGTTGGCAATAGACACTTCCCCGCACATAAATACATTTTGG
CCGTGCGCTCTGACTTCTTCCAGAAGTTGTTTCTTTCAGATGGCTCTTCTTTAGAGCTGACGGATGTTTA
CCAGAAAGACGAAGATGCTGCTGGCTGCCATCTCTTTGTGGTGGAGAAAGTCCATCCTGACTTGTTCGAA
TACCTCTTACAGTTCATGTACACAGATACCTGTGACTTGTTAACTCATGGCTTCAAACCAAGAATGATCG
TGAAGAGAAAGGCAGAAGACTGTGAGGGCTCCCCAGATTCTCATCTGCACACTGTGAATTGCCATGTGGA
TGATAAACAGAAGTCAGCATTTGAGGTGTACAGAAGCAACCAGGCCCACACACTTAGTGAACGGCAGAAG
AGCAAACCCAAATCTTCTAAGAAGGGAAAAGGTGTTGGGGACGACGACCCTGTAAGGATGTTGCAAAGTG
TTGCTAAGAAGTTTGGCCTCAGTAATTTGAGTAGCAGGTTAGAAGGAGTCAGATTGGAAAATGAAAAAAT
TAATGTTATTGCGAAGAAAACTGGCAATAAACTGAAGCTAAGTCAGAAAAAATGTTCGTTTCTGTATGAT
GTCACCATGAAGTCTGTGGATGGAAAGGAGTTCTCCTGCCATAAGTGTGTGCTCTGTGCGAGACTTGAGT
ATTTCCACAGCATGCTTAGCAGATCGTGGATTGAGGCCTCCAGCTGTGCAGCTCTGGAAATGCCAATCCA
GTCTGAGATTCTGAAAGTGATTTTGGACTACCTCTACACTGATGAGGCTGTGGTGATAAAAGAGTCTCAA
AACGTGGACTTTGTTTGTAGTGTTCTTGTCGTGGCTGATCAGCTTCTCATAACTCGGTTAAAGGAGATTT
GTGAAGTAGCATTGACTGAAAACCTTACCCTTAAGAATGCTGCGATGCTGCTGGAGTTTGCAGCCTTGTA
CAATGCTGGGCAGTTGAAGCTCTCTTGTTTACAGTTCATAGGACTGAATATGGCAGCTTTACTTGAAGCA
AGGTCTCTGGATGTTTTAAGTGAGGATGTTTTGAAGGACCTTTCCATATTCTACAGAAAAATGATTCCAG
CAATGGAGAGAAGAGTCATTACACCGTATCAAGATGGGCCAGATATTAGCTCTATGCAAGTAGAAGACGG
AGAGGTCTTTTTTAAAGAAGAAATAAACATGGAACCAAATTACTCGGAAACTATGTTCAAGAAGGCGAAA
ACAAGAGCTAAAAAGAAGCCACGGAAGCGCTCAGACAGTTCAGGAGGCTACACCCTTTCAGATGTTATCC
AGAGTCCACCGTCTGCAGGATTATTAAAGTCTGCAAAGACCAATTCTGTGGAGTCTCTTCCAGAATTGTT
GACCTCAGATTCGGAAGGAAGCTATGCAGGAGTGGCGAGTCCCAGAGACCTCCAGTCGCCCGACTTCACA
GCAGGATTCCATTCGGATAAGGTCGAGGGGAAAGCTAAGCCATACGTGAATGGTATACCTCCTCCATGTA
CTAGGGAAGATGTAAAGCCGTGGGAGAAATCACCAACAACTAAGTCTGCTCCCCAGTTCATCCCCAGTAA
CAGAGTGGACACTGCAGCCTCTTCCAGTTGGCTTGCCGGCTCTTGCAGTCCTGTGAGTCCTCCTGTTGTG
GATCTTAGAACCATCATGGAAACAGAAGAAAACAGACAGAAATATGGCGCAGCACCAAAGTCAAACTTAG
GAAAGATTATTTCTCACGGAATCAAACTTTCTCAGAAGCAACGGAAAATGATTGCATTGACCACCAAAGA
AAACAATTCAGGAACGAACAGCATGGAAGCCATTTTGACAGCTCCTTCCAAGTCCCCCAAGCCTGCGAAT
GCATGGGCACCTCTGCACTCACCTTTATCCAGGTCATTCCGGGATTTTTTACTAGAAGAAAAAAAACCCG
TTCCTGGCTATGGTTCAGGAGATCATGTCAAAAAAGTTTGTTTTAAAGGAACTGAAAACTCTCCAGCCCT
AAATGTTGCAAGATGTTCAACCCATGGAACTCCAGGATTAGAAAGCAATCATGTTTCTGATTTTCCACTT
CTAGACAGTCCCAACCCCTGGCAGTCTTCCTCCCTGGCGGCTTCTCCCGCAGTTGCTCCAGTCACATTTG
CATCCATTGTAGAAGAAGAGCGGCAACAAGAAGCTGCCCTCATCAGAAGCCGGGAGAAACCCTTGGCTCT
CATTCAGGTCGAGGAGCATGCAATACAAGACTTGCTGGTTTTCTATGAGGCATTTGGCAACCCCGAGGAG
TTTGTCGTCGTTGAAAGGGCACCACAGGGGCCTCTGGCAGTGCCTATGTGGAACAAGCATGGCTGCTAG

Translation (1352 aa):
MDAATPDCTSKCRSLKHALDVLSVVTKGSESQIKSFLARYCYNAATVKDAFGRNAGHLASSCGKKGVLDW
LIEKGVDLLVKDKESGWTALHRSVFYGHIDCVWSLLKHGVSLYMQDKEGLSPLDLLMKDRPTHVVFKDTD
PTEVYTWGDNTNFTLGHGSQNSKHHPELLDLFSRSGVYVKQVVLCKFHSVFLSQKGQVYTCGHGRGGRLG
HGDEQTCLVPRLVEGLSGHNCSQVAAAKDHTVVLTDDGCVYTFGLNMFHQLGIIPPPASCNVPRQIQAKY
LKGRTIIGVAAGRFHTVLWTREAVYTLGLNGGQLGHLLDPNGEKCVTTPRQVSALHHKDIAVSLVAASDG
ATVCVTTRGDIYLLADYQCKKMATKQLNLKKVLVSGGCMEYKVDPEHLTENGGQKICVLAMDGAGRVFCW
RSISSSLKQCRWAYPRQVSISDIALNRNEILFVTQDGEGFKGKWFEDKRKNSEKKADILPNLHHSSSDVS
CVPDTNSVYERIRLEKLPFAHRAVSVSTDPSGCNFAILQSDPKTSLYEIPVVSSSSFFEEFGKLLRETDE
MDSFHDVTFQVGNRHFPAHKYILAVRSDFFQKLFLSDGSSLELTDVYQKDEDAAGCHLFVVEKVHPDLFE
YLLQFMYTDTCDLLTHGFKPRMIVKRKAEDCEGSPDSHLHTVNCHVDDKQKSAFEVYRSNQAHTLSERQK
SKPKSSKKGKGVGDDDPVRMLQSVAKKFGLSNLSSRLEGVRLENEKINVIAKKTGNKLKLSQKKCSFLYD
VTMKSVDGKEFSCHKCVLCARLEYFHSMLSRSWIEASSCAALEMPIQSEILKVILDYLYTDEAVVIKESQ
NVDFVCSVLVVADQLLITRLKEICEVALTENLTLKNAAMLLEFAALYNAGQLKLSCLQFIGLNMAALLEA
RSLDVLSEDVLKDLSIFYRKMIPAMERRVITPYQDGPDISSMQVEDGEVFFKEEINMEPNYSETMFKKAK
TRAKKKPRKRSDSSGGYTLSDVIQSPPSAGLLKSAKTNSVESLPELLTSDSEGSYAGVASPRDLQSPDFT
AGFHSDKVEGKAKPYVNGIPPPCTREDVKPWEKSPTTKSAPQFIPSNRVDTAASSSWLAGSCSPVSPPVV
DLRTIMETEENRQKYGAAPKSNLGKIISHGIKLSQKQRKMIALTTKENNSGTNSMEAILTAPSKSPKPAN
AWAPLHSPLSRSFRDFLLEEKKPVPGYGSGDHVKKVCFKGTENSPALNVARCSTHGTPGLESNHVSDFPL
LDSPNPWQSSSLAASPAVAPVTFASIVEEERQQEAALIRSREKPLALIQVEEHAIQDLLVFYEAFGNPEE
FVVVERAPQGPLAVPMWNKHGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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