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Report for CCDS40685.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40685.1 Public Mus musculus 9 Tex9 23 108 98 CCDS HistoryNCBI Gene:21778Re-query CCDS DB by CCDS ID:40685.1Re-query CCDS DB by GeneID:21778See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40685.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000184125.7 ENSMUSP00000139026.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000184125.7Link to Ensembl Protein Viewer:ENSMUSP00000139026.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000184125Re-query CCDS DB by Protein ID:ENSMUSP00000139026
Original member Current member NCBI NM_009359.4 NP_033385.2 Accepted alive Link to Nucleotide Sequence:NM_009359.4Link to Protein Sequence:NP_033385.2Re-query CCDS DB by Nucleotide ID:NM_009359Re-query CCDS DB by Protein ID:NP_033385Link to BLAST:NP_033385.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033385.2 387 Q9D845-1 387 100% 0 0

Chromosomal Locations for CCDS 40685.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 72461201 72461278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72461856 72461990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72473658 72473792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72477737 72477910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72478340 72478422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72480597 72480775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72482447 72482529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72484069 72484114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72486780 72486859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72488012 72488075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72491739 72491818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 72491926 72491952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGGCGGGGCGAAGTGTTAGAGTGCCGAGACGCGGTTCTGCAGGTACCCAGTCGCGCGGGCAGCTTGCAG
CTGGACGGGACCTCCTCGCCCGGGAACAAGAGTACAAGCGTTTAAATGAAGAATTGGAGGCAAAAACTGC
TGATCTGGTTCGACAAGCTGAGGAAGTAATAAGAGAGCAGCAAGAAGTGCGAGCCAGGCCTTTCTCAGCA
CTAACTACATCATGCAAAGAGGAAGGTGGTTCCAGTTCGAGAGATCTGTTGTCATCTGAAGGGACTCATC
CATGGACAGAAACCAAGCCAAAGACCAAAAACACTGGTCCTGTAAACAAGATTCAAAACAGACTCCACTC
TGCAGATAAAGAAAGGAAAACAAATTCAAGTGCTAAACTGAAATATCCTGATGCGCAGACTGCCAACGAT
GTGGCCATCCCAGACGATTTCTCAGACTTCTCCCTTGCCAAGACGATTAGCAGGATTGAAGGGCAGCTGG
ACGAGGACGGCTTGCCCGAGTGTGCAGAGGACGACAGCTTCTGTGGTGTGAGTAAGGACATTGGCACAGA
GGCTCAGATCCGATTTCTAAAGGCCAAGCTCCATGTGATGCAAGAGGAGCTGGACAGCGTTGTGTGTGAG
TGCAGTAAGAAGGAGGATAAAATTCAGGACTTAAAGTCCAAGGTGAAAAATTTGGAAGAAGACTGTGTGC
GACAACAGCGAACAGTTACATCCCAGCAATCCCAAATAGAAAAATATAAGAATCTTTTTGAAGAAGCAAA
TAAAAAATGTGATGAATTACAGCAGCAGCTGTCATCAGTAGAACGGGAATTAGAAAGTAAAAGAAGATTA
CAAAAACAGGCTGCCTCAAGTCAGAGTGCCACAGAGGTCCGTCTGAATCGAGCTCTTGAAGAAGCAGAAA
AGTATAAAGTGGAGCTGAGTAAACTCAGGCAAACTAACAAGGATATTACAAATGAAGACCATCAAAAAAT
TGAAGTGTTGAAATCAGAAAACAAAAAACTAGAAAGACAAAAAGGAGAATTAATGATAGGGTTCAAGAAG
CAGTTGAAATTGATTGACATTTTGAAAAGGCAGAAGATGCATATTGAAGCTGCCAAGATGCTGTCTTTCA
GCGAGGAGGAGTTTATGAAGGCTCTTGAGTGGGGCAGTTCATGA

Translation (387 aa):
MAGRSVRVPRRGSAGTQSRGQLAAGRDLLAREQEYKRLNEELEAKTADLVRQAEEVIREQQEVRARPFSA
LTTSCKEEGGSSSRDLLSSEGTHPWTETKPKTKNTGPVNKIQNRLHSADKERKTNSSAKLKYPDAQTAND
VAIPDDFSDFSLAKTISRIEGQLDEDGLPECAEDDSFCGVSKDIGTEAQIRFLKAKLHVMQEELDSVVCE
CSKKEDKIQDLKSKVKNLEEDCVRQQRTVTSQQSQIEKYKNLFEEANKKCDELQQQLSSVERELESKRRL
QKQAASSQSATEVRLNRALEEAEKYKVELSKLRQTNKDITNEDHQKIEVLKSENKKLERQKGELMIGFKK
QLKLIDILKRQKMHIEAAKMLSFSEEEFMKALEWGSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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