NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, April 30, 2024, starting at 9:30 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40634.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40634.1 Public Mus musculus 9 Rdx 23 108 98 CCDS HistoryNCBI Gene:19684Re-query CCDS DB by CCDS ID:40634.1Re-query CCDS DB by GeneID:19684See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40634.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000590.15 ENSMUSP00000000590.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000590.15Link to Ensembl Protein Viewer:ENSMUSP00000000590.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000000590Re-query CCDS DB by Protein ID:ENSMUSP00000000590
Original member Current member EBI ENSMUST00000163153.8 ENSMUSP00000128249.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163153.8Link to Ensembl Protein Viewer:ENSMUSP00000128249.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163153Re-query CCDS DB by Protein ID:ENSMUSP00000128249
Original member Current member NCBI NM_001104616.1 NP_001098086.1 Accepted alive Link to Nucleotide Sequence:NM_001104616.1Link to Protein Sequence:NP_001098086.1Re-query CCDS DB by Nucleotide ID:NM_001104616Re-query CCDS DB by Protein ID:NP_001098086Link to BLAST:NP_001098086.1
Original member Current member NCBI NM_009041.3 NP_033067.2 Accepted alive Link to Nucleotide Sequence:NM_009041.3Link to Protein Sequence:NP_033067.2Re-query CCDS DB by Nucleotide ID:NM_009041Re-query CCDS DB by Protein ID:NP_033067Link to BLAST:NP_033067.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001098086.1 583 P26043 583 100% 0 0
NP_033067.2 583 P26043 583 100% 0 0

Chromosomal Locations for CCDS 40634.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 52060892 52060903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52063578 52063661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52064860 52064955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52065645 52065919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52067361 52067444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52068130 52068276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52068807 52068903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52069615 52069778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52073154 52073284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52081019 52081179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52082443 52082535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52085103 52085345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 52086315 52086479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1752 nt):
ATGCCGAAGCCAATCAATGTAAGAGTAACTACAATGGACGCTGAGCTAGAATTTGCCATCCAGCCCAATA
CAACTGGCAAACAACTTTTTGACCAGGTTGTAAAAACAGTTGGCTTACGTGAGGTCTGGTTTTTTGGGCT
GCAATATGTAGACAGCAAAGGATATTCTACATGGCTTAAATTGAATAAAAAGGTAACACAGCAAGATGTT
AAAAAAGAAAATCCTTTACAGTTCAAGTTTAGAGCTAAATTCTTTCCTGAAGATGTTTCTGAGGAATTGA
TTCAAGAAATAACACAGAGACTTTTCTTCTTGCAAGTTAAAGAAGCCATCTTAAATGATGAGATATATTG
CCCACCAGAAACTGCAGTTCTTTTGGCTTCGTATGCTGTCCAAGCCAAGTATGGAGATTATAATAAAGAG
ATTCACAAACCAGGCTATCTGGCTAATGACAGACTCTTACCACAGCGTGTTTTGGAACAACACAAACTGA
CCAAAGAGCAGTGGGAGGAGAGAATACAGAACTGGCATGAGGAACACAGAGGGATGCTAAGGGAAGATTC
GATGATGGAATACTTGAAGATTGCGCAAGATCTAGAGATGTATGGTGTCAACTACTTTGAAATCAAGAAT
AAGAAGGGTACTGAGCTGTGGCTAGGTGTTGATGCTTTAGGCCTGAATATTTATGAACATGATGACAAGT
TAACACCTAAAATTGGTTTTCCCTGGAGTGAAATCAGAAATATTTCATTTAATGACAAAAAATTCGTTAT
AAAGCCAATTGACAAAAAGGCACCTGATTTTGTCTTCTATGCACCTCGTCTGAGAATCAATAAACGAATT
TTGGCCTTATGTATGGGAAACCATGAACTGTACATGCGAAGGAGAAAGCCTGATACTATTGAAGTACAGC
AGATGAAGGCTCAGGCCCGGGAGGAAAAGCATCAGAAGCAGCTAGAAAGGGCACAATTAGAGAATGAAAA
GAAGAAACGAGAAATAGCAGAAAAGGAAAAGGAAAGAATAGAACGTGAAAAGGAAGAGCTGATGGAGCGT
CTGAGGCAGATCGAAGAGCAAACAGTGAAAGCCCAGAAAGAACTAGAAGAACAGACTCGGAAAGCTCTAG
AACTGGAGCAGGAGCGCCAGCGAGCAAAAGAGGAGGCAGAGCGGCTAGACAGGGAGCGCCGGGCTGCAGA
AGAAGCCAAGTCTGCAATCGCCAAGCAAGCTGCTGACCAGATGAAGAACCAGGAGCAGCTGGCAGCAGAA
CTTGCCGAATTCACTGCCAAGATTGCACTTTTAGAAGAAGCCAAGAAGAAAAAGGAAGAGGAAGCTACTG
AGTGGCAGCACAAAGCTTTTGCAGCTCAGGAAGACTTGGAAAAGACCAAAGAAGAGCTAAAAACTGTGAT
GTCTGCGCCACCTCCACCTCCCCCTCCTCCAGTCATCCCTCCCACGGAGAACGAGCATGACGAGCAGGAC
GAGAACAGTGCGGAGGCCAGCGCCGAGCTGTCCAGCGAGGGGGTGATGAACCACCGAAGCGAGGAGGAGC
GGGTCACCGAAACCCAGAAGAATGAACGCGTGAAGAAGCAGCTCCAGGCATTGAGTTCAGAATTAGCCCA
AGCTAGAGATGAAACCAAGAAGACACAGAACGATGTTCTTCACGCTGAGAATGTCAAGGCCGGCCGTGAT
AAGTACAAGACCCTTCGGCAGATTCGACAAGGCAATACGAAGCAGCGCATCGATGAGTTTGAAGCCATGT
GA

Translation (583 aa):
MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKKVTQQDV
KKENPLQFKFRAKFFPEDVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKE
IHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKN
KKGTELWLGVDALGLNIYEHDDKLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRI
LALCMGNHELYMRRRKPDTIEVQQMKAQAREEKHQKQLERAQLENEKKKREIAEKEKERIEREKEELMER
LRQIEEQTVKAQKELEEQTRKALELEQERQRAKEEAERLDRERRAAEEAKSAIAKQAADQMKNQEQLAAE
LAEFTAKIALLEEAKKKKEEEATEWQHKAFAAQEDLEKTKEELKTVMSAPPPPPPPPVIPPTENEHDEQD
ENSAEASAELSSEGVMNHRSEEERVTETQKNERVKKQLQALSSELAQARDETKKTQNDVLHAENVKAGRD
KYKTLRQIRQGNTKQRIDEFEAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH