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Report for CCDS40543.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40543.2 Public Mus musculus 9 Zfp26 23 108 98 CCDS HistoryNCBI Gene:22688Re-query CCDS DB by CCDS ID:40543.2Re-query CCDS DB by GeneID:22688See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 40543.1
The coding region has been updated to represent an alternative splicing pattern, resulting in an extended protein N-terminus that is more supported by the available transcript and protein data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 40543.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159569.8 ENSMUSP00000124075.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159569.8Link to Ensembl Protein Viewer:ENSMUSP00000124075.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000159569Re-query CCDS DB by Protein ID:ENSMUSP00000124075
Original member NCBI NM_001357809.1 NP_001344738.1 Updated not alive Link to Nucleotide Sequence:NM_001357809.1Link to Protein Sequence:NP_001344738.1Re-query CCDS DB by Nucleotide ID:NM_001357809Re-query CCDS DB by Protein ID:NP_001344738
Current member NCBI NM_001357809.2 NP_001344738.1 Accepted alive Link to Nucleotide Sequence:NM_001357809.2Link to Protein Sequence:NP_001344738.1Re-query CCDS DB by Nucleotide ID:NM_001357809Re-query CCDS DB by Protein ID:NP_001344738Link to BLAST:NP_001344738.1
Original member NCBI NM_011753.3 NP_035883.2 Updated not alive Link to Nucleotide Sequence:NM_011753.3Link to Protein Sequence:NP_035883.2Re-query CCDS DB by Nucleotide ID:NM_011753Re-query CCDS DB by Protein ID:NP_035883
Current member NCBI NM_011753.4 NP_035883.2 Accepted alive Link to Nucleotide Sequence:NM_011753.4Link to Protein Sequence:NP_035883.2Re-query CCDS DB by Nucleotide ID:NM_011753Re-query CCDS DB by Protein ID:NP_035883Link to BLAST:NP_035883.2

Chromosomal Locations for CCDS 40543.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 20436387 20438660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20439522 20439604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20440192 20440275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20441329 20441455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20442180 20442265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20444259 20444367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20444894 20444985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20445746 20445770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2880 nt):
ATGGACTTGACTAGTTTGTCCTGTGAAAGTCTGCTTTCTGGTGACCAGAACTGCAGTCAAGGAGAAGAGA
CAGAGGGAGAAAGCATGCTGGCTGATTGCCTGAAAAACTGTAATAAGGATGAGGCTGTGGATTTCTCTGA
AGAGGAGTGGACTACAAAGGCTCCAACTCAGAACAGCAAGCCTGGTGCTGTGGCGGTGGAGGAGCACACA
AGCCTGGCCGCTGTAGAATTGGAAAAGCAACTACAAACCAAAGATTTAGCACCAGAGCAGGATTTTTTGA
CAAGACACACCTTCATGGAGACACAGCAGGTGGATGCAGTGACCTTTGAAGATGTGGCTGTGGACTTTAC
CCAGGAAGAGTGGACCTCACTGGACCCAGTTCAGAGGAACCTCTACAGAGATGTGATGCTGGAGAACTAC
CAGAACCTGGCCACAGTAGGAGGTCAGATGTTTAAACCCAGCCTGATCTCTTGGTTGGAGAAGAAAGTAG
AGTTGACAGTAATAGAGCAAGGAATTCTCCAAGAATGGGAAATGCACCTTAAGACAAAAAGGACAGCACT
TCAGCAGGATAGATTTTGGTCAGATATGTCAAATGGGATGCAACTGGGAAGAGAGCACAGTGGAGGGGAA
CCTGGTGACCCTGTTCAAGTTGGAGCAGTTTTTAGTGAAGATTCATGCCCTCAAACTCACAGTAGTACTT
CAAATACAGGGAACACTTTTGCGTGTAACTTAGATGGAAAAGACTTTCAGCCACTCCTTAAAGAAACTTC
TACTGAAGAGAACATTGTCCAGTTGAACCAGTGTGTAAAACCTTTGATTTTCACTCCAGATGTTTCCCAG
AAAAAGTGCACTCCGGAAAAATCTGTTGAATGCAGTGACTGTGGGGAAACTTTCGTTAATCAGCTAGAAC
TTCAGACACATAGTTCTTCTCATCGTGAAAAGAATATCCACAAATCAGAGGAGTGTGGACAAGCTTCTAC
TCATCCTATAAGCCATGGTGGGCATGTGATTCCCACTGAAAAAAAATACTATGAATGTAAGAAATGTGAA
AAATTTTTTACACATCCTGTGTACCTTAATATCCATATGCAAAGCCACACTGTGGAGAAACCCTATGACT
GTAAGGAATGTGGGAAAGCCTTCACTGAGCGCTCAAGCTTAATTGTGCATCTACGACAACACACTCGAGA
GAAGTCTTACGAGTGTAAGGAATGTGGGAAAACCTTTATTCAACCCTCACGTCTTACAGAGCATATGAGA
AGTCATACGGGAGAGAAGCCGTATCAGTGTGACCAGTGTGGGAATGCCTTTGCGTCTTCCTCTTACCTTA
CTACACACTTGAGAACTCATACTGGAGAGAAGCCCTTTGAGTGTAACATATGTGGGAAGGCATTCACACG
TTCCTCTTACCTGCTAGGTCACATACGAACTCATACAGGTGAAAAGCCCTATGAATGTAAAGTATGTGGG
AAAGCGTTCAGTGGCCGTTCTTGGCTAACCATACACTTACGGAAACATACTGGAGAGAGGCCCTATCCAT
GTACAGAATGTGAGAAAGCCTTCACCAGCTTCGCTCAGCTAACTGAACATATAAAAACTCACACTGGTGA
GAAGCCCTTCCGGTGTAAAGTATGTGCAAGGACTTTTAGAAATTCCTCATGCCTTAAGACTCACTTTCGA
ATTCACACTGGAATAAAACCATACAAATGTAATTACTGTGGGAAAGCCTTCACTGCACGCTCAGGCCTTA
CTAAGCATGTACTAATTCACAATGGTGAGAAGCCCTATGAGTGTAAGGAGTGTGGGAAAGCCTTCAGTAC
ATCTTCCGGCCTTGTTGAACATATAAGAATTCATACAGGAGAGAAGCCCTTTGAATGTTACCAGTGTGGG
AAAGCCTTGGCTCATTCCTCATCCCTTGTTGGACATTTAAGAACTCACACTGGAGAGAAACCCTTTGAGT
GTAATCAGTGTGACAAAACATTTACACGATCTTCTTATCTTCGTATTCATATGCGAACTCACACCGGAGA
GAAACCATATGAATGTAAAGAGTGTGGGAAAACTTTCCCTGAGCGCTCATGCCTTACTAAACACATAAGG
ACACACACTGGTGAAAGGCCCTATGAATGTAAGGAGTGTGGCAAAGGCTTTATTAGCTTTGCTCAGCTTA
CTGTACACATAAAAACTCATAGTTCTGAGAGACCCTTTCAGTGTAAGGTATGCACAAAATCTTTTAGAAA
CTCTTCATCCCTTGAGACCCACTTCCGAATTCACACTGGAGTAAAACCCTATAAATGCAGTTACTGTGGG
AAAGCCTTCACTGCTCGCTCAGGCCTTACCATCCATTTACGCAATCACACTGGGGAGAAATCCTATGCAT
GCCAAGAGTGTGGAAAAGCCTTTAGCACTTCCTCAGGCCTTATTGCACATATAAGAAGTCACAAAGGAGA
GAAACCCTTTGAATGTGACCACTGTGGGAAAGCCTTTGCTTCTTCATCTTATCTTAATGTGCATTTGAAA
ATTCACACTGGAGAAAAACCCTTTCAGTGTACAGTATGTGGGAAAACATTTACGTGTTCTTCTTACCTTC
CAGTTCACATGCGAACTCACACTGGAGAGAAGCCTTTTCAGTGTATAATATGTGGAAAGTCATTTTTGTG
GTCCTCGTACCTTAGAGTTCACATGCGAATTCACACTGGAGAGAAACCCTATGTATGTCAGTACTGTGGA
AAAGCTTTTACAGAGCACTCAGGCCTTAATAAACATTTACGGAAACACACAGGAGAGAAACCATATGAAT
ATAAGGAATGTGGGGAAAACTTCACTACTTCTGCTGATGCTAATGAACATGAAACTCCCCACTGGGGGGA
GAACCTTTGA

Translation (959 aa):
MDLTSLSCESLLSGDQNCSQGEETEGESMLADCLKNCNKDEAVDFSEEEWTTKAPTQNSKPGAVAVEEHT
SLAAVELEKQLQTKDLAPEQDFLTRHTFMETQQVDAVTFEDVAVDFTQEEWTSLDPVQRNLYRDVMLENY
QNLATVGGQMFKPSLISWLEKKVELTVIEQGILQEWEMHLKTKRTALQQDRFWSDMSNGMQLGREHSGGE
PGDPVQVGAVFSEDSCPQTHSSTSNTGNTFACNLDGKDFQPLLKETSTEENIVQLNQCVKPLIFTPDVSQ
KKCTPEKSVECSDCGETFVNQLELQTHSSSHREKNIHKSEECGQASTHPISHGGHVIPTEKKYYECKKCE
KFFTHPVYLNIHMQSHTVEKPYDCKECGKAFTERSSLIVHLRQHTREKSYECKECGKTFIQPSRLTEHMR
SHTGEKPYQCDQCGNAFASSSYLTTHLRTHTGEKPFECNICGKAFTRSSYLLGHIRTHTGEKPYECKVCG
KAFSGRSWLTIHLRKHTGERPYPCTECEKAFTSFAQLTEHIKTHTGEKPFRCKVCARTFRNSSCLKTHFR
IHTGIKPYKCNYCGKAFTARSGLTKHVLIHNGEKPYECKECGKAFSTSSGLVEHIRIHTGEKPFECYQCG
KALAHSSSLVGHLRTHTGEKPFECNQCDKTFTRSSYLRIHMRTHTGEKPYECKECGKTFPERSCLTKHIR
THTGERPYECKECGKGFISFAQLTVHIKTHSSERPFQCKVCTKSFRNSSSLETHFRIHTGVKPYKCSYCG
KAFTARSGLTIHLRNHTGEKSYACQECGKAFSTSSGLIAHIRSHKGEKPFECDHCGKAFASSSYLNVHLK
IHTGEKPFQCTVCGKTFTCSSYLPVHMRTHTGEKPFQCIICGKSFLWSSYLRVHMRIHTGEKPYVCQYCG
KAFTEHSGLNKHLRKHTGEKPYEYKECGENFTTSADANEHETPHWGENL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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