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Report for CCDS40499.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40499.1 Public Mus musculus 8 Foxc2 23 108 98 CCDS HistoryNCBI Gene:14234Re-query CCDS DB by CCDS ID:40499.1Re-query CCDS DB by GeneID:14234See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40499.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054691.7 ENSMUSP00000055290.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054691.7Link to Ensembl Protein Viewer:ENSMUSP00000055290.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000054691Re-query CCDS DB by Protein ID:ENSMUSP00000055290
Original member Current member NCBI NM_013519.2 NP_038547.2 Accepted alive Link to Nucleotide Sequence:NM_013519.2Link to Protein Sequence:NP_038547.2Re-query CCDS DB by Nucleotide ID:NM_013519Re-query CCDS DB by Protein ID:NP_038547Link to BLAST:NP_038547.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038547.2 494 Q61850 494 100% 0 0

Chromosomal Locations for CCDS 40499.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 121116615 121118099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGCAGGCGCGTTACTCGGTATCGGACCCCAACGCCCTGGGAGTGGTACCCTATTTGAGTGAGCAAAACT
ACTACCGGGCGGCCGGCAGCTACGGCGGCATGGCCAGCCCCATGGGCGTCTACTCCGGCCACCCGGAGCA
GTACGGCGCCGGCATGGGCCGCTCCTACGCGCCCTACCACCACCAGCCCGCGGCGCCCAAGGACCTGGTG
AAGCCGCCCTACAGCTATATAGCGCTCATCACCATGGCGATCCAGAACGCGCCAGAGAAGAAGATCACTC
TGAACGGCATCTACCAGTTCATCATGGACCGTTTCCCCTTCTACCGCGAGAACAAGCAGGGCTGGCAGAA
CAGCATCCGCCACAACCTGTCACTCAATGAGTGCTTCGTGAAAGTGCCGCGCGACGACAAGAAGCCGGGC
AAGGGCAGCTACTGGACGCTCGACCCGGACTCCTACAACATGTTCGAGAATGGCAGCTTCCTGCGGCGGC
GGCGGCGCTTCAAGAAGAAGGATGTGCCCAAGGACAAGGAGGAGCGGGCCCACCTCAAGGAGCCGCCCTC
GACCACGGCCAAGGGCGCTCCGACAGGGACCCCGGTAGCTGACGGGCCCAAGGAGGCCGAGAAGAAAGTC
GTGGTTAAGAGCGAGGCGGCGTCCCCCGCGCTGCCGGTCATCACCAAGGTGGAGACGCTGAGCCCCGAGG
GAGCGCTGCAGGCCAGTCCGCGCAGCGCATCCTCCACGCCCGCAGGTTCCCCAGACGGCTCGCTGCCGGA
GCACCACGCCGCGGCGCCTAACGGGCTGCCCGGCTTCAGCGTGGAGACCATCATGACGCTGCGCACGTCG
CCTCCGGGCGGCGATCTGAGCCCAGCGGCCGCGCGCGCCGGCCTGGTGGTGCCACCGCTGGCACTGCCAT
ACGCCGCAGCGCCACCCGCCGCTTACACGCAGCCGTGCGCGCAGGGCCTGGAGGCTGCGGGCTCCGCGGG
CTACCAGTGCAGTATGCGGGCTATGAGTCTGTACACCGGGGCCGAGCGGCCCGCGCACGTGTGCGTTCCG
CCCGCGCTGGACGAGGCTCTGTCGGACCACCCGAGCGGCCCCGGCTCCCCGCTCGGCGCCCTCAACCTCG
CAGCGGGTCAGGAGGGCGCGTTGGGGGCCTCGGGTCACCACCACCAGCATCACGGCCACCTCCACCCGCA
GGCGCCACCGCCCGCCCCGCAGCCCCCTCCCGCGCCGCAGCCCGCCACCCAGGCCACCTCCTGGTATCTG
AACCACGGCGGGGACCTGAGCCACCTCCCCGGCCACACGTTTGCAACCCAACAGCAAACTTTCCCCAACG
TCCGGGAGATGTTCAACTCGCACCGGCTAGGACTGGACAACTCGTCCCTCGGGGAGTCCCAGGTGAGCAA
TGCGAGCTGTCAGCTGCCCTATCGAGCTACGCCGTCCCTCTACCGCCACGCAGCCCCCTACTCTTACGAC
TGCACCAAATACTGA

Translation (494 aa):
MQARYSVSDPNALGVVPYLSEQNYYRAAGSYGGMASPMGVYSGHPEQYGAGMGRSYAPYHHQPAAPKDLV
KPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVPRDDKKPG
KGSYWTLDPDSYNMFENGSFLRRRRRFKKKDVPKDKEERAHLKEPPSTTAKGAPTGTPVADGPKEAEKKV
VVKSEAASPALPVITKVETLSPEGALQASPRSASSTPAGSPDGSLPEHHAAAPNGLPGFSVETIMTLRTS
PPGGDLSPAAARAGLVVPPLALPYAAAPPAAYTQPCAQGLEAAGSAGYQCSMRAMSLYTGAERPAHVCVP
PALDEALSDHPSGPGSPLGALNLAAGQEGALGASGHHHQHHGHLHPQAPPPAPQPPPAPQPATQATSWYL
NHGGDLSHLPGHTFATQQQTFPNVREMFNSHRLGLDNSSLGESQVSNASCQLPYRATPSLYRHAAPYSYD
CTKY


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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