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Report for CCDS40421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40421.1 Public Mus musculus 8 Vps35 23 108 98 CCDS HistoryNCBI Gene:65114Re-query CCDS DB by CCDS ID:40421.1Re-query CCDS DB by GeneID:65114See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40421.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034131.9 ENSMUSP00000034131.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034131.9Link to Ensembl Protein Viewer:ENSMUSP00000034131.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000034131Re-query CCDS DB by Protein ID:ENSMUSP00000034131
Original member Current member NCBI NM_022997.5 NP_075373.1 Accepted alive Link to Nucleotide Sequence:NM_022997.5Link to Protein Sequence:NP_075373.1Re-query CCDS DB by Nucleotide ID:NM_022997Re-query CCDS DB by Protein ID:NP_075373Link to BLAST:NP_075373.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075373.1 796 Q9EQH3 796 100% 0 0

Chromosomal Locations for CCDS 40421.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 85261130 85261309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85261995 85262138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85263311 85263550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85264144 85264323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85270693 85270815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85273472 85273627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85274820 85275027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85278704 85278852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85278960 85279056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85281236 85281345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85281841 85281924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85283993 85284206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85286341 85286523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85287696 85287819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85289706 85289802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85294859 85294957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 85299455 85299457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2391 nt):
ATGCCTACAACACAGCAGTCACCCCAGGATGAGCAGGAAAAACTTTTGGATGAAGCCATCCAGGCTGTGA
AGGTTCAGTCATTCCAGATGAAAAGATGCCTGGACAAAAACAAGCTGATGGATGCTCTGAAGCATGCCTC
CAATATGCTTGGAGAGCTCCGGACCTCTATGCTGTCACCAAAGAGTTACTATGAACTTTATATGGCTATT
TCTGATGAACTGCACTACTTGGAGGTCTACCTGACTGATGAATTTGCTAAAGGAAGAAAGGTGGCAGATC
TCTATGAACTTGTACAGTACGCGGGAAACATTATTCCAAGGCTTTATCTCTTGATCACAGTTGGAGTTGT
ATATGTCAAGTCATTTCCTCAATCCAGGAAAGATATTTTGAAAGATTTGGTAGAAATGTGCCGTGGTGTG
CAGCATCCGCTAAGGGGTTTGTTTCTTCGAAATTACCTTCTTCAGTGTACTAGGAACATTTTACCTGATG
AAGGAGAGCCAACAGATGAAGAAACAACTGGTGATATCAGTGATTCCATGGATTTTGTACTACTCAACTT
TGCAGAAATGAATAAGCTCTGGGTGCGGATGCAGCATCAAGGACATAGTCGAGATAGAGAAAAAAGAGAA
CGAGAGAGACAAGAACTGAGAATTTTAGTGGGAACAAATTTGGTGCGCCTTAGTCAGTTGGAAGGTGTAA
ATGTGGAACGTTACAAACAGATTGTTCTAACAGGCATTCTGGAGCAGGTTGTGAATTGTAGGGATGCTCT
GGCTCAGGAGTATCTCATGGAGTGCATCATTCAGGTTTTTCCTGATGAGTTTCATCTTCAGACTTTGAAT
CCTTTTCTTAGAGCTTGTGCTGAATTACACCAAAATGTAAATGTGAAAAACATAATCATTGCTTTAATTG
ACAGATTAGCTTTATTTGCTCATCGTGAAGATGGACCCGGAATTCCAGCTGAGATTAAACTTTTTGACAT
ATTTTCACAACAGGTGGCTACAGTCATACAGTCCAGACAAGACATGCCATCAGAGGATGTTGTATCTTTA
CAAGTCTCTCTCATTAATCTTGCTATGAAATGTTACCCTGATCGTGTGGACTACGTCGATAAAGTTCTAG
AAACAACAGTGGAGATATTCAATAAGCTTAACCTTGAACATATTGCTACCAGTAGTGCAGTTTCAAAGGA
GCTTACCAGACTTTTGAAGATACCTGTTGATACTTACAACAATATCTTAACAGTATTAAAGTTAAAGCAT
TTCCACCCACTTTTTGAGTACTTTGACTACGAGTCCAGAAAGAGCATGAGCTGTTATGTGCTTAGTAATG
TTCTGGATTATAACACAGAAATCGTCTCTCAGGACCAGGTAGATTCCATAATGAATTTGGTGTCCACATT
GATTCAGGATCAGCCAGACCAACCTGTAGAAGACCCTGATCCAGAAGACTTCGCTGATGAACAGAGCCTT
GTTGGCCGATTTATTCATCTGCTACGTTCTGATGATCCTGACCAGCAGTATTTGATTTTGAATACGGCAC
GAAAACATTTTGGGGCTGGTGGAAATCAGCGGATTCGCTTCACACTGCCACCTTTGGTATTTGCAGCTTA
CCAGTTGGCTTTTCGATACAAAGAGAATTCCCAAATGGATGACAAGTGGGAAAAGAAATGCCAGAAGATA
TTTTCATTTGCTCACCAGACTATCAGTGCTTTGATTAAAGCTGAGCTGGCTGAATTACCACTGAGACTTT
TTCTTCAAGGAGCATTAGCTGCTGGAGAAATTGGCTTTGAAAATCATGAAACAGTAGCATATGAATTTAT
GTCCCAGGCATTTTCTCTATATGAAGATGAAATCAGTGATTCTAAAGCACAGCTGGCTGCTATCACCTTG
ATCATCGGTACTTTTGAGAGGATGAAATGCTTCAGTGAAGAGAATCATGAACCCTTGAGAACTCAGTGTG
CACTTGCTGCATCAAAACTTCTGAAAAAACCAGATCAAGGCCGAGCCGTGAGCACATGTGCGCATCTCTT
TTGGTCTGGCCGAAACACAGACAAAAATGGGGAAGAGCTTCATGGAGGTAAAAGGGTCATGGAGTGCCTA
AAGAAGGCACTAAAAATAGCAAATCAGTGCATGGACCCCTCTCTACAAGTTCAGCTCTTTATAGAGATTC
TGAACAGGTACATCTATTTCTATGAAAAAGAAAATGATGCGGTAACCATTCAAGTCTTGAACCAACTTAT
TCAAAAGATTCGAGAAGATCTCCCAAATCTTGAGTCCAGTGAAGAAACAGAACAAATAAACAAGCATTTT
CACAACACATTGGAGCACTTGCGCTCAAGACGGGAATCACCAGAGTCTGAGGGGCCAATCTATGAAGGTC
TCATCCTTTAA

Translation (796 aa):
MPTTQQSPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMAI
SDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKSFPQSRKDILKDLVEMCRGV
QHPLRGLFLRNYLLQCTRNILPDEGEPTDEETTGDISDSMDFVLLNFAEMNKLWVRMQHQGHSRDREKRE
RERQELRILVGTNLVRLSQLEGVNVERYKQIVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLN
PFLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIPAEIKLFDIFSQQVATVIQSRQDMPSEDVVSL
QVSLINLAMKCYPDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLKLKH
FHPLFEYFDYESRKSMSCYVLSNVLDYNTEIVSQDQVDSIMNLVSTLIQDQPDQPVEDPDPEDFADEQSL
VGRFIHLLRSDDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSQMDDKWEKKCQKI
FSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITL
IIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECL
KKALKIANQCMDPSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHF
HNTLEHLRSRRESPESEGPIYEGLIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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